Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28160 and AZOBR_RS28165 are separated by 151 nucleotides AZOBR_RS28165 and AZOBR_RS28170 are separated by 36 nucleotides AZOBR_RS28170 and AZOBR_RS28175 are separated by 126 nucleotides
AZOBR_RS28160: AZOBR_RS28160 - hypothetical protein, at 489,780 to 490,349
_RS28160
AZOBR_RS28165: AZOBR_RS28165 - hypothetical protein, at 490,501 to 490,743
_RS28165
AZOBR_RS28170: AZOBR_RS28170 - TetR family transcriptional regulator, at 490,780 to 491,376
_RS28170
AZOBR_RS28175: AZOBR_RS28175 - short-chain dehydrogenase, at 491,503 to 492,258
_RS28175
Position (kb) 490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 489.790 kb on + strand at 489.790 kb on + strand at 489.790 kb on + strand at 489.791 kb on - strand at 489.856 kb on + strand, within AZOBR_RS28160 at 489.856 kb on + strand, within AZOBR_RS28160 at 489.979 kb on + strand, within AZOBR_RS28160 at 489.980 kb on - strand, within AZOBR_RS28160 at 489.980 kb on - strand, within AZOBR_RS28160 at 490.012 kb on + strand, within AZOBR_RS28160 at 490.012 kb on + strand, within AZOBR_RS28160 at 491.235 kb on - strand, within AZOBR_RS28170 at 491.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 489,790 + -0.4 489,790 + +0.2 489,790 + +0.1 489,791 - -3.7 489,856 + AZOBR_RS28160 0.13 +0.1 489,856 + AZOBR_RS28160 0.13 -1.8 489,979 + AZOBR_RS28160 0.35 -1.2 489,980 - AZOBR_RS28160 0.35 -1.6 489,980 - AZOBR_RS28160 0.35 -0.4 490,012 + AZOBR_RS28160 0.41 +0.5 490,012 + AZOBR_RS28160 0.41 +1.2 491,235 - AZOBR_RS28170 0.76 -1.1 491,512 - -1.2
Or see this region's nucleotide sequence