Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27825

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27820 and AZOBR_RS27825 are separated by 252 nucleotidesAZOBR_RS27825 and AZOBR_RS27830 are separated by 128 nucleotides AZOBR_RS27820: AZOBR_RS27820 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 411,223 to 412,095 _RS27820 AZOBR_RS27825: AZOBR_RS27825 - hypothetical protein, at 412,348 to 412,959 _RS27825 AZOBR_RS27830: AZOBR_RS27830 - proline racemase, at 413,088 to 414,101 _RS27830 Position (kb) 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 411.791 kb on + strand, within AZOBR_RS27820at 411.831 kb on - strand, within AZOBR_RS27820at 412.142 kb on - strandat 412.203 kb on - strandat 412.811 kb on - strand, within AZOBR_RS27825at 413.064 kb on + strandat 413.078 kb on + strandat 413.383 kb on + strand, within AZOBR_RS27830at 413.384 kb on - strand, within AZOBR_RS27830at 413.384 kb on - strand, within AZOBR_RS27830at 413.384 kb on - strand, within AZOBR_RS27830at 413.384 kb on - strand, within AZOBR_RS27830at 413.578 kb on + strand, within AZOBR_RS27830at 413.579 kb on - strand, within AZOBR_RS27830at 413.657 kb on - strand, within AZOBR_RS27830at 413.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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411,791 + AZOBR_RS27820 0.65 +0.1
411,831 - AZOBR_RS27820 0.70 +0.8
412,142 - -0.6
412,203 - +0.1
412,811 - AZOBR_RS27825 0.76 -3.5
413,064 + -0.2
413,078 + -3.6
413,383 + AZOBR_RS27830 0.29 +0.3
413,384 - AZOBR_RS27830 0.29 -1.1
413,384 - AZOBR_RS27830 0.29 +0.8
413,384 - AZOBR_RS27830 0.29 +0.3
413,384 - AZOBR_RS27830 0.29 -0.3
413,578 + AZOBR_RS27830 0.48 +0.7
413,579 - AZOBR_RS27830 0.48 +2.4
413,657 - AZOBR_RS27830 0.56 +0.4
413,861 - +0.3

Or see this region's nucleotide sequence