Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27820

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27815 and AZOBR_RS27820 are separated by 26 nucleotidesAZOBR_RS27820 and AZOBR_RS27825 are separated by 252 nucleotidesAZOBR_RS27825 and AZOBR_RS27830 are separated by 128 nucleotides AZOBR_RS27815: AZOBR_RS27815 - isopropylmalate isomerase, at 409,781 to 411,196 _RS27815 AZOBR_RS27820: AZOBR_RS27820 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 411,223 to 412,095 _RS27820 AZOBR_RS27825: AZOBR_RS27825 - hypothetical protein, at 412,348 to 412,959 _RS27825 AZOBR_RS27830: AZOBR_RS27830 - proline racemase, at 413,088 to 414,101 _RS27830 Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 410.466 kb on + strand, within AZOBR_RS27815at 410.467 kb on - strand, within AZOBR_RS27815at 410.595 kb on + strand, within AZOBR_RS27815at 410.618 kb on + strand, within AZOBR_RS27815at 410.618 kb on + strand, within AZOBR_RS27815at 410.618 kb on + strand, within AZOBR_RS27815at 411.069 kb on + strandat 411.240 kb on - strandat 411.258 kb on - strandat 411.258 kb on - strandat 411.260 kb on + strandat 411.261 kb on - strandat 411.791 kb on + strand, within AZOBR_RS27820at 411.831 kb on - strand, within AZOBR_RS27820at 412.142 kb on - strandat 412.203 kb on - strandat 412.811 kb on - strand, within AZOBR_RS27825at 413.064 kb on + strandat 413.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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410,466 + AZOBR_RS27815 0.48 +0.2
410,467 - AZOBR_RS27815 0.48 +0.4
410,595 + AZOBR_RS27815 0.57 +4.3
410,618 + AZOBR_RS27815 0.59 -2.6
410,618 + AZOBR_RS27815 0.59 +0.8
410,618 + AZOBR_RS27815 0.59 -2.0
411,069 + -0.9
411,240 - +1.5
411,258 - -0.5
411,258 - +1.6
411,260 + -1.1
411,261 - +0.5
411,791 + AZOBR_RS27820 0.65 +0.1
411,831 - AZOBR_RS27820 0.70 +0.8
412,142 - -0.6
412,203 - +0.1
412,811 - AZOBR_RS27825 0.76 -3.5
413,064 + -0.2
413,078 + -3.6

Or see this region's nucleotide sequence