Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26960 and AZOBR_RS26965 are separated by 523 nucleotides AZOBR_RS26965 and AZOBR_RS26970 are separated by 92 nucleotides AZOBR_RS26970 and AZOBR_RS26975 are separated by 172 nucleotides
AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016
_RS26960
AZOBR_RS26965: AZOBR_RS26965 - 30S ribosomal protein S21, at 196,540 to 196,743
_RS26965
AZOBR_RS26970: AZOBR_RS26970 - translation initiation factor IF-3, at 196,836 to 197,369
_RS26970
AZOBR_RS26975: AZOBR_RS26975 - secretion protein HylD, at 197,542 to 198,684
_RS26975
Position (kb) 196
197
198 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 196.282 kb on + strand at 196.282 kb on + strand at 196.282 kb on + strand at 196.282 kb on + strand at 196.283 kb on - strand at 196.283 kb on - strand at 196.283 kb on - strand at 196.283 kb on - strand at 196.837 kb on + strand at 196.842 kb on - strand at 197.398 kb on + strand at 197.398 kb on + strand at 197.399 kb on - strand at 197.511 kb on + strand at 197.512 kb on - strand at 197.806 kb on + strand, within AZOBR_RS26975 at 197.806 kb on + strand, within AZOBR_RS26975 at 197.806 kb on + strand, within AZOBR_RS26975 at 197.806 kb on + strand, within AZOBR_RS26975 at 197.807 kb on - strand, within AZOBR_RS26975 at 197.807 kb on - strand, within AZOBR_RS26975 at 197.807 kb on - strand, within AZOBR_RS26975 at 197.807 kb on - strand, within AZOBR_RS26975 at 197.827 kb on + strand, within AZOBR_RS26975 at 197.828 kb on - strand, within AZOBR_RS26975 at 198.044 kb on - strand, within AZOBR_RS26975 at 198.283 kb on + strand, within AZOBR_RS26975 at 198.284 kb on - strand, within AZOBR_RS26975 at 198.352 kb on + strand, within AZOBR_RS26975 at 198.353 kb on - strand, within AZOBR_RS26975
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 196,282 + +2.3 196,282 + -3.9 196,282 + +0.3 196,282 + +0.5 196,283 - -0.7 196,283 - -0.4 196,283 - -1.1 196,283 - +0.2 196,837 + +0.0 196,842 - +1.7 197,398 + +0.7 197,398 + -1.1 197,399 - -2.0 197,511 + +0.8 197,512 - +0.3 197,806 + AZOBR_RS26975 0.23 +0.8 197,806 + AZOBR_RS26975 0.23 -0.8 197,806 + AZOBR_RS26975 0.23 -0.3 197,806 + AZOBR_RS26975 0.23 -1.5 197,807 - AZOBR_RS26975 0.23 +0.5 197,807 - AZOBR_RS26975 0.23 -0.5 197,807 - AZOBR_RS26975 0.23 -0.5 197,807 - AZOBR_RS26975 0.23 +0.3 197,827 + AZOBR_RS26975 0.25 -0.2 197,828 - AZOBR_RS26975 0.25 -0.4 198,044 - AZOBR_RS26975 0.44 -0.4 198,283 + AZOBR_RS26975 0.65 +1.3 198,284 - AZOBR_RS26975 0.65 +0.3 198,352 + AZOBR_RS26975 0.71 +0.1 198,353 - AZOBR_RS26975 0.71 -3.2
Or see this region's nucleotide sequence