Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26680

Experiment: Paraquat dichloride 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS26670 and AZOBR_RS26675 are separated by 5 nucleotidesAZOBR_RS26675 and AZOBR_RS26680 are separated by 85 nucleotidesAZOBR_RS26680 and AZOBR_RS26685 are separated by 49 nucleotides AZOBR_RS26670: AZOBR_RS26670 - zinc transporter ZitB, at 130,881 to 131,759 _RS26670 AZOBR_RS26675: AZOBR_RS26675 - IclR family transcriptional regulator, at 131,765 to 132,649 _RS26675 AZOBR_RS26680: AZOBR_RS26680 - ABC transporter permease, at 132,735 to 133,655 _RS26680 AZOBR_RS26685: AZOBR_RS26685 - ABC transporter permease, at 133,705 to 135,468 _RS26685 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1at 131.973 kb on + strand, within AZOBR_RS26675at 131.973 kb on + strand, within AZOBR_RS26675at 132.129 kb on + strand, within AZOBR_RS26675at 132.129 kb on + strand, within AZOBR_RS26675at 132.129 kb on + strand, within AZOBR_RS26675at 132.309 kb on + strand, within AZOBR_RS26675at 132.310 kb on - strand, within AZOBR_RS26675at 132.310 kb on - strand, within AZOBR_RS26675at 132.316 kb on - strand, within AZOBR_RS26675at 132.316 kb on - strand, within AZOBR_RS26675at 132.349 kb on - strand, within AZOBR_RS26675at 132.378 kb on + strand, within AZOBR_RS26675at 132.685 kb on + strandat 132.686 kb on - strandat 132.691 kb on + strandat 132.691 kb on + strandat 132.692 kb on - strandat 132.692 kb on - strandat 132.766 kb on + strandat 132.766 kb on + strandat 132.766 kb on + strandat 132.766 kb on + strandat 132.767 kb on - strandat 132.767 kb on - strandat 132.767 kb on - strandat 132.767 kb on - strandat 132.767 kb on - strandat 133.138 kb on + strand, within AZOBR_RS26680at 133.138 kb on + strand, within AZOBR_RS26680at 133.138 kb on + strand, within AZOBR_RS26680at 133.139 kb on - strand, within AZOBR_RS26680at 133.139 kb on - strand, within AZOBR_RS26680at 133.139 kb on - strand, within AZOBR_RS26680at 133.139 kb on - strand, within AZOBR_RS26680at 133.244 kb on - strand, within AZOBR_RS26680at 133.276 kb on + strand, within AZOBR_RS26680at 133.321 kb on + strand, within AZOBR_RS26680at 133.322 kb on - strand, within AZOBR_RS26680at 133.322 kb on - strand, within AZOBR_RS26680at 133.548 kb on + strand, within AZOBR_RS26680at 133.660 kb on + strandat 133.660 kb on + strandat 133.660 kb on + strandat 133.660 kb on + strandat 133.660 kb on + strandat 133.660 kb on + strandat 133.661 kb on - strandat 133.661 kb on - strandat 133.661 kb on - strandat 133.661 kb on - strandat 133.745 kb on + strandat 133.746 kb on - strandat 133.746 kb on - strandat 133.940 kb on - strand, within AZOBR_RS26685at 134.021 kb on + strand, within AZOBR_RS26685at 134.022 kb on - strand, within AZOBR_RS26685at 134.057 kb on + strand, within AZOBR_RS26685at 134.057 kb on + strand, within AZOBR_RS26685at 134.057 kb on + strand, within AZOBR_RS26685at 134.058 kb on - strand, within AZOBR_RS26685at 134.058 kb on - strand, within AZOBR_RS26685at 134.132 kb on + strand, within AZOBR_RS26685at 134.132 kb on + strand, within AZOBR_RS26685at 134.133 kb on - strand, within AZOBR_RS26685at 134.133 kb on - strand, within AZOBR_RS26685at 134.342 kb on + strand, within AZOBR_RS26685at 134.342 kb on + strand, within AZOBR_RS26685at 134.343 kb on - strand, within AZOBR_RS26685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
remove
131,973 + AZOBR_RS26675 0.24 +0.2
131,973 + AZOBR_RS26675 0.24 +0.8
132,129 + AZOBR_RS26675 0.41 -1.1
132,129 + AZOBR_RS26675 0.41 +0.0
132,129 + AZOBR_RS26675 0.41 +1.1
132,309 + AZOBR_RS26675 0.61 -0.0
132,310 - AZOBR_RS26675 0.62 -0.7
132,310 - AZOBR_RS26675 0.62 -2.7
132,316 - AZOBR_RS26675 0.62 -0.0
132,316 - AZOBR_RS26675 0.62 +0.3
132,349 - AZOBR_RS26675 0.66 +0.6
132,378 + AZOBR_RS26675 0.69 -0.8
132,685 + -0.9
132,686 - +0.3
132,691 + -0.5
132,691 + -0.9
132,692 - -1.3
132,692 - -0.9
132,766 + -0.1
132,766 + +0.8
132,766 + +0.3
132,766 + -0.6
132,767 - +0.1
132,767 - -1.2
132,767 - +0.5
132,767 - -0.3
132,767 - -0.1
133,138 + AZOBR_RS26680 0.44 -1.6
133,138 + AZOBR_RS26680 0.44 +0.0
133,138 + AZOBR_RS26680 0.44 -0.2
133,139 - AZOBR_RS26680 0.44 -0.4
133,139 - AZOBR_RS26680 0.44 +0.2
133,139 - AZOBR_RS26680 0.44 +0.1
133,139 - AZOBR_RS26680 0.44 +0.8
133,244 - AZOBR_RS26680 0.55 -0.1
133,276 + AZOBR_RS26680 0.59 +0.2
133,321 + AZOBR_RS26680 0.64 -2.6
133,322 - AZOBR_RS26680 0.64 -0.3
133,322 - AZOBR_RS26680 0.64 +0.5
133,548 + AZOBR_RS26680 0.88 -0.8
133,660 + +0.1
133,660 + -0.7
133,660 + +1.5
133,660 + -0.1
133,660 + -0.8
133,660 + +0.4
133,661 - +0.8
133,661 - -0.7
133,661 - +0.5
133,661 - +0.8
133,745 + +0.1
133,746 - +1.0
133,746 - -2.3
133,940 - AZOBR_RS26685 0.13 +1.4
134,021 + AZOBR_RS26685 0.18 -0.0
134,022 - AZOBR_RS26685 0.18 -0.3
134,057 + AZOBR_RS26685 0.20 +0.1
134,057 + AZOBR_RS26685 0.20 +0.1
134,057 + AZOBR_RS26685 0.20 +0.3
134,058 - AZOBR_RS26685 0.20 -0.1
134,058 - AZOBR_RS26685 0.20 -0.4
134,132 + AZOBR_RS26685 0.24 +0.8
134,132 + AZOBR_RS26685 0.24 -0.2
134,133 - AZOBR_RS26685 0.24 +0.1
134,133 - AZOBR_RS26685 0.24 +0.4
134,342 + AZOBR_RS26685 0.36 -1.0
134,342 + AZOBR_RS26685 0.36 -1.1
134,343 - AZOBR_RS26685 0.36 +0.0

Or see this region's nucleotide sequence