Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24470 and AZOBR_RS24475 are separated by 3 nucleotides AZOBR_RS24475 and AZOBR_RS24480 are separated by 34 nucleotides AZOBR_RS24480 and AZOBR_RS24485 are separated by 5 nucleotides
AZOBR_RS24470: AZOBR_RS24470 - hypothetical protein, at 551,415 to 552,446
_RS24470
AZOBR_RS24475: AZOBR_RS24475 - hypothetical protein, at 552,450 to 553,451
_RS24475
AZOBR_RS24480: AZOBR_RS24480 - putative histidine biosynthesis protein, at 553,486 to 554,193
_RS24480
AZOBR_RS24485: AZOBR_RS24485 - aldehyde-activating protein, at 554,199 to 554,720
_RS24485
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 551.750 kb on + strand, within AZOBR_RS24470 at 551.879 kb on - strand, within AZOBR_RS24470 at 552.076 kb on + strand, within AZOBR_RS24470 at 552.077 kb on - strand, within AZOBR_RS24470 at 552.823 kb on - strand, within AZOBR_RS24475 at 552.823 kb on - strand, within AZOBR_RS24475 at 553.257 kb on + strand, within AZOBR_RS24475 at 553.257 kb on + strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.651 kb on + strand, within AZOBR_RS24480 at 554.191 kb on + strand at 554.191 kb on + strand at 554.303 kb on - strand, within AZOBR_RS24485 at 554.303 kb on - strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 551,750 + AZOBR_RS24470 0.32 +0.1 551,879 - AZOBR_RS24470 0.45 -1.9 552,076 + AZOBR_RS24470 0.64 +0.1 552,077 - AZOBR_RS24470 0.64 +0.3 552,823 - AZOBR_RS24475 0.37 -2.3 552,823 - AZOBR_RS24475 0.37 -0.0 553,257 + AZOBR_RS24475 0.81 -0.0 553,257 + AZOBR_RS24475 0.81 -3.4 553,258 - AZOBR_RS24475 0.81 -0.2 553,258 - AZOBR_RS24475 0.81 -0.0 553,258 - AZOBR_RS24475 0.81 -1.8 553,258 - AZOBR_RS24475 0.81 -0.6 553,651 + AZOBR_RS24480 0.23 +0.7 554,191 + -0.3 554,191 + -3.7 554,303 - AZOBR_RS24485 0.20 +0.5 554,303 - AZOBR_RS24485 0.20 -0.9 554,308 + AZOBR_RS24485 0.21 +0.2 554,308 + AZOBR_RS24485 0.21 -2.0 554,309 - AZOBR_RS24485 0.21 -0.4 554,309 - AZOBR_RS24485 0.21 -0.9 554,309 - AZOBR_RS24485 0.21 -0.3 554,309 - AZOBR_RS24485 0.21 -0.4 554,309 - AZOBR_RS24485 0.21 -3.7
Or see this region's nucleotide sequence