Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23300 and AZOBR_RS23305 are separated by 200 nucleotides AZOBR_RS23305 and AZOBR_RS23310 are separated by 35 nucleotides
AZOBR_RS23300: AZOBR_RS23300 - dihydrodipicolinate synthase, at 253,271 to 254,185
_RS23300
AZOBR_RS23305: AZOBR_RS23305 - hypothetical protein, at 254,386 to 255,366
_RS23305
AZOBR_RS23310: AZOBR_RS23310 - hypothetical protein, at 255,402 to 256,379
_RS23310
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 253.603 kb on - strand, within AZOBR_RS23300 at 253.755 kb on + strand, within AZOBR_RS23300 at 253.755 kb on + strand, within AZOBR_RS23300 at 253.776 kb on + strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.777 kb on - strand, within AZOBR_RS23300 at 253.857 kb on + strand, within AZOBR_RS23300 at 253.857 kb on + strand, within AZOBR_RS23300 at 253.857 kb on + strand, within AZOBR_RS23300 at 254.531 kb on - strand, within AZOBR_RS23305 at 254.531 kb on - strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.633 kb on - strand, within AZOBR_RS23305 at 254.633 kb on - strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.635 kb on - strand, within AZOBR_RS23305 at 254.690 kb on - strand, within AZOBR_RS23305 at 254.690 kb on - strand, within AZOBR_RS23305 at 254.728 kb on + strand, within AZOBR_RS23305 at 254.728 kb on + strand, within AZOBR_RS23305 at 254.729 kb on - strand, within AZOBR_RS23305 at 254.729 kb on - strand, within AZOBR_RS23305 at 255.092 kb on - strand, within AZOBR_RS23305 at 255.134 kb on - strand, within AZOBR_RS23305 at 255.355 kb on + strand at 255.356 kb on - strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.368 kb on + strand at 255.369 kb on - strand at 255.703 kb on - strand, within AZOBR_RS23310 at 255.703 kb on - strand, within AZOBR_RS23310 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 253,603 - AZOBR_RS23300 0.36 -2.0 253,755 + AZOBR_RS23300 0.53 +0.7 253,755 + AZOBR_RS23300 0.53 -1.9 253,776 + AZOBR_RS23300 0.55 +0.9 253,777 - AZOBR_RS23300 0.55 +0.0 253,777 - AZOBR_RS23300 0.55 -3.0 253,777 - AZOBR_RS23300 0.55 -0.9 253,777 - AZOBR_RS23300 0.55 +0.8 253,777 - AZOBR_RS23300 0.55 -1.4 253,857 + AZOBR_RS23300 0.64 +1.8 253,857 + AZOBR_RS23300 0.64 -2.4 253,857 + AZOBR_RS23300 0.64 -1.4 254,531 - AZOBR_RS23305 0.15 +0.4 254,531 - AZOBR_RS23305 0.15 +0.7 254,632 + AZOBR_RS23305 0.25 -0.1 254,632 + AZOBR_RS23305 0.25 -0.1 254,632 + AZOBR_RS23305 0.25 +0.1 254,632 + AZOBR_RS23305 0.25 -3.0 254,632 + AZOBR_RS23305 0.25 -0.4 254,633 - AZOBR_RS23305 0.25 -0.4 254,633 - AZOBR_RS23305 0.25 -1.2 254,634 + AZOBR_RS23305 0.25 -2.9 254,634 + AZOBR_RS23305 0.25 -2.6 254,634 + AZOBR_RS23305 0.25 -0.3 254,634 + AZOBR_RS23305 0.25 +2.5 254,635 - AZOBR_RS23305 0.25 -0.1 254,690 - AZOBR_RS23305 0.31 -0.0 254,690 - AZOBR_RS23305 0.31 +0.4 254,728 + AZOBR_RS23305 0.35 -0.6 254,728 + AZOBR_RS23305 0.35 -1.2 254,729 - AZOBR_RS23305 0.35 +1.2 254,729 - AZOBR_RS23305 0.35 -2.1 255,092 - AZOBR_RS23305 0.72 -0.4 255,134 - AZOBR_RS23305 0.76 +0.0 255,355 + +0.7 255,356 - +0.5 255,364 + +0.3 255,364 + -0.2 255,364 + +0.2 255,364 + +0.6 255,364 + +0.5 255,364 + +0.9 255,364 + +0.9 255,364 + +0.8 255,364 + +0.1 255,368 + -1.9 255,369 - -1.3 255,703 - AZOBR_RS23310 0.31 +0.1 255,703 - AZOBR_RS23310 0.31 +1.1 256,252 - AZOBR_RS23310 0.87 +1.8 256,252 - AZOBR_RS23310 0.87 +1.1 256,291 - -0.7
Or see this region's nucleotide sequence