Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22745

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22740 and AZOBR_RS22745 are separated by 280 nucleotidesAZOBR_RS22745 and AZOBR_RS22750 are separated by 51 nucleotides AZOBR_RS22740: AZOBR_RS22740 - transcriptional regulator, at 110,032 to 110,871 _RS22740 AZOBR_RS22745: AZOBR_RS22745 - ATPase AAA, at 111,152 to 113,818 _RS22745 AZOBR_RS22750: AZOBR_RS22750 - glutamyl-tRNA(Gln) amidotransferase, at 113,870 to 115,282 _RS22750 Position (kb) 111 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2 3at 110.270 kb on + strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.358 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.653 kb on + strand, within AZOBR_RS22740at 110.654 kb on - strand, within AZOBR_RS22740at 110.871 kb on + strandat 110.872 kb on - strandat 110.907 kb on + strandat 110.926 kb on - strandat 111.134 kb on + strandat 111.644 kb on + strand, within AZOBR_RS22745at 111.645 kb on - strand, within AZOBR_RS22745at 112.118 kb on + strand, within AZOBR_RS22745at 112.118 kb on + strand, within AZOBR_RS22745at 112.119 kb on - strand, within AZOBR_RS22745at 112.119 kb on - strand, within AZOBR_RS22745at 112.223 kb on + strand, within AZOBR_RS22745at 112.292 kb on + strand, within AZOBR_RS22745at 112.292 kb on + strand, within AZOBR_RS22745at 112.293 kb on - strand, within AZOBR_RS22745at 112.642 kb on + strand, within AZOBR_RS22745at 112.661 kb on + strand, within AZOBR_RS22745at 112.661 kb on + strand, within AZOBR_RS22745at 112.661 kb on + strand, within AZOBR_RS22745at 112.662 kb on - strand, within AZOBR_RS22745at 112.662 kb on - strand, within AZOBR_RS22745at 113.051 kb on + strand, within AZOBR_RS22745at 113.051 kb on + strand, within AZOBR_RS22745at 113.052 kb on - strand, within AZOBR_RS22745at 113.108 kb on + strand, within AZOBR_RS22745at 113.109 kb on - strand, within AZOBR_RS22745at 113.949 kb on + strandat 114.045 kb on + strand, within AZOBR_RS22750at 114.046 kb on - strand, within AZOBR_RS22750at 114.046 kb on - strand, within AZOBR_RS22750at 114.046 kb on - strand, within AZOBR_RS22750at 114.046 kb on - strand, within AZOBR_RS22750at 114.315 kb on + strand, within AZOBR_RS22750

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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110,270 + AZOBR_RS22740 0.28 -0.1
110,271 - AZOBR_RS22740 0.28 +0.2
110,271 - AZOBR_RS22740 0.28 +0.9
110,271 - AZOBR_RS22740 0.28 +0.5
110,358 - AZOBR_RS22740 0.39 -0.9
110,649 - AZOBR_RS22740 0.73 +1.2
110,649 - AZOBR_RS22740 0.73 +1.0
110,649 - AZOBR_RS22740 0.73 -0.5
110,653 + AZOBR_RS22740 0.74 -2.6
110,654 - AZOBR_RS22740 0.74 +0.9
110,871 + +0.2
110,872 - -0.7
110,907 + -0.6
110,926 - +0.3
111,134 + -0.5
111,644 + AZOBR_RS22745 0.18 +0.9
111,645 - AZOBR_RS22745 0.18 -0.5
112,118 + AZOBR_RS22745 0.36 +0.6
112,118 + AZOBR_RS22745 0.36 +0.3
112,119 - AZOBR_RS22745 0.36 -0.1
112,119 - AZOBR_RS22745 0.36 +0.9
112,223 + AZOBR_RS22745 0.40 -0.1
112,292 + AZOBR_RS22745 0.43 -1.1
112,292 + AZOBR_RS22745 0.43 +1.0
112,293 - AZOBR_RS22745 0.43 +1.0
112,642 + AZOBR_RS22745 0.56 -0.2
112,661 + AZOBR_RS22745 0.57 -0.5
112,661 + AZOBR_RS22745 0.57 +0.5
112,661 + AZOBR_RS22745 0.57 +0.2
112,662 - AZOBR_RS22745 0.57 -1.1
112,662 - AZOBR_RS22745 0.57 +0.4
113,051 + AZOBR_RS22745 0.71 +1.1
113,051 + AZOBR_RS22745 0.71 +1.1
113,052 - AZOBR_RS22745 0.71 -0.7
113,108 + AZOBR_RS22745 0.73 +0.2
113,109 - AZOBR_RS22745 0.73 -0.1
113,949 + +1.1
114,045 + AZOBR_RS22750 0.12 +3.6
114,046 - AZOBR_RS22750 0.12 +0.1
114,046 - AZOBR_RS22750 0.12 -0.3
114,046 - AZOBR_RS22750 0.12 -1.1
114,046 - AZOBR_RS22750 0.12 +1.3
114,315 + AZOBR_RS22750 0.31 +0.0

Or see this region's nucleotide sequence