Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22325 and AZOBR_RS22330 are separated by 73 nucleotides
AZOBR_RS22325: AZOBR_RS22325 - branched-chain amino acid ABC transporter ATP-binding protein, at 15,123 to 15,983
_RS22325
AZOBR_RS22330: AZOBR_RS22330 - branched-chain amino acid ABC transporter substrate-binding protein, at 16,057 to 17,340
_RS22330
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.295 kb on + strand at 14.295 kb on + strand at 14.296 kb on - strand at 14.296 kb on - strand at 14.304 kb on + strand at 14.328 kb on + strand at 14.328 kb on + strand at 14.329 kb on - strand at 14.329 kb on - strand at 14.332 kb on - strand at 14.332 kb on - strand at 14.965 kb on - strand at 14.965 kb on - strand at 15.057 kb on + strand at 15.058 kb on - strand at 15.058 kb on - strand at 15.277 kb on + strand, within AZOBR_RS22325 at 15.533 kb on - strand, within AZOBR_RS22325 at 15.533 kb on - strand, within AZOBR_RS22325 at 15.538 kb on + strand, within AZOBR_RS22325 at 15.538 kb on + strand, within AZOBR_RS22325 at 15.539 kb on - strand, within AZOBR_RS22325 at 15.539 kb on - strand, within AZOBR_RS22325 at 15.539 kb on - strand, within AZOBR_RS22325 at 15.674 kb on + strand, within AZOBR_RS22325 at 15.874 kb on + strand, within AZOBR_RS22325 at 15.875 kb on - strand, within AZOBR_RS22325 at 16.280 kb on + strand, within AZOBR_RS22330 at 16.280 kb on + strand, within AZOBR_RS22330 at 16.281 kb on - strand, within AZOBR_RS22330 at 16.281 kb on - strand, within AZOBR_RS22330 at 16.352 kb on + strand, within AZOBR_RS22330 at 16.353 kb on - strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.379 kb on + strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.380 kb on - strand, within AZOBR_RS22330 at 16.395 kb on - strand, within AZOBR_RS22330 at 16.635 kb on - strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.640 kb on + strand, within AZOBR_RS22330 at 16.641 kb on - strand at 16.641 kb on - strand, within AZOBR_RS22330 at 16.641 kb on - strand, within AZOBR_RS22330 at 16.641 kb on - strand, within AZOBR_RS22330 at 16.641 kb on - strand, within AZOBR_RS22330 at 16.683 kb on - strand, within AZOBR_RS22330 at 16.805 kb on + strand, within AZOBR_RS22330 at 16.805 kb on + strand, within AZOBR_RS22330 at 16.806 kb on - strand, within AZOBR_RS22330 at 16.883 kb on + strand, within AZOBR_RS22330 at 16.907 kb on + strand, within AZOBR_RS22330 at 16.908 kb on - strand, within AZOBR_RS22330 at 16.979 kb on + strand, within AZOBR_RS22330 at 16.983 kb on - strand, within AZOBR_RS22330
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 14,295 + -0.2 14,295 + -0.5 14,296 - +3.7 14,296 - +1.9 14,304 + -0.1 14,328 + -0.8 14,328 + +0.8 14,329 - +2.4 14,329 - +0.4 14,332 - -1.6 14,332 - +1.1 14,965 - +0.0 14,965 - -0.2 15,057 + -3.0 15,058 - +0.1 15,058 - +0.7 15,277 + AZOBR_RS22325 0.18 +1.2 15,533 - AZOBR_RS22325 0.48 -0.6 15,533 - AZOBR_RS22325 0.48 -1.6 15,538 + AZOBR_RS22325 0.48 -0.6 15,538 + AZOBR_RS22325 0.48 +1.5 15,539 - AZOBR_RS22325 0.48 +1.4 15,539 - AZOBR_RS22325 0.48 -0.2 15,539 - AZOBR_RS22325 0.48 -0.4 15,674 + AZOBR_RS22325 0.64 -1.2 15,874 + AZOBR_RS22325 0.87 +1.0 15,875 - AZOBR_RS22325 0.87 +1.4 16,280 + AZOBR_RS22330 0.17 -0.7 16,280 + AZOBR_RS22330 0.17 -0.3 16,281 - AZOBR_RS22330 0.17 +2.1 16,281 - AZOBR_RS22330 0.17 +0.2 16,352 + AZOBR_RS22330 0.23 -0.7 16,353 - AZOBR_RS22330 0.23 +1.0 16,379 + AZOBR_RS22330 0.25 +0.9 16,379 + AZOBR_RS22330 0.25 +0.5 16,379 + AZOBR_RS22330 0.25 +0.4 16,379 + AZOBR_RS22330 0.25 +1.8 16,379 + AZOBR_RS22330 0.25 +0.4 16,380 - AZOBR_RS22330 0.25 +0.4 16,380 - AZOBR_RS22330 0.25 +0.5 16,380 - AZOBR_RS22330 0.25 +0.7 16,380 - AZOBR_RS22330 0.25 -0.3 16,380 - AZOBR_RS22330 0.25 +1.3 16,380 - AZOBR_RS22330 0.25 -1.0 16,395 - AZOBR_RS22330 0.26 +0.8 16,635 - AZOBR_RS22330 0.45 +0.2 16,640 + AZOBR_RS22330 0.45 +1.2 16,640 + AZOBR_RS22330 0.45 +0.4 16,640 + AZOBR_RS22330 0.45 +0.4 16,640 + AZOBR_RS22330 0.45 +0.6 16,641 - +1.1 16,641 - AZOBR_RS22330 0.45 -0.6 16,641 - AZOBR_RS22330 0.45 +0.2 16,641 - AZOBR_RS22330 0.45 +0.5 16,641 - AZOBR_RS22330 0.45 +1.0 16,683 - AZOBR_RS22330 0.49 -1.8 16,805 + AZOBR_RS22330 0.58 +0.9 16,805 + AZOBR_RS22330 0.58 +0.3 16,806 - AZOBR_RS22330 0.58 +0.1 16,883 + AZOBR_RS22330 0.64 -1.5 16,907 + AZOBR_RS22330 0.66 -0.1 16,908 - AZOBR_RS22330 0.66 +0.1 16,979 + AZOBR_RS22330 0.72 -0.0 16,983 - AZOBR_RS22330 0.72 +0.1
Or see this region's nucleotide sequence