Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22315

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22310 and AZOBR_RS22315 are separated by 234 nucleotides AZOBR_RS22310: AZOBR_RS22310 - isovaleryl-CoA dehydrogenase, at 10,785 to 11,957 _RS22310 AZOBR_RS22315: AZOBR_RS22315 - aldehyde dehydrogenase, at 12,192 to 13,685 _RS22315 Position (kb) 12 13 14Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 11.213 kb on - strand, within AZOBR_RS22310at 11.429 kb on - strand, within AZOBR_RS22310at 11.958 kb on - strandat 12.059 kb on - strandat 12.059 kb on - strandat 12.449 kb on - strand, within AZOBR_RS22315at 12.547 kb on + strand, within AZOBR_RS22315at 12.547 kb on + strand, within AZOBR_RS22315at 12.547 kb on + strand, within AZOBR_RS22315at 12.548 kb on - strand, within AZOBR_RS22315at 12.548 kb on - strand, within AZOBR_RS22315at 12.548 kb on - strand, within AZOBR_RS22315at 12.631 kb on + strand, within AZOBR_RS22315at 12.631 kb on + strand, within AZOBR_RS22315at 12.632 kb on - strand, within AZOBR_RS22315at 12.632 kb on - strand, within AZOBR_RS22315at 13.706 kb on + strandat 13.707 kb on - strandat 14.295 kb on + strandat 14.295 kb on + strandat 14.296 kb on - strandat 14.296 kb on - strandat 14.304 kb on + strandat 14.328 kb on + strandat 14.328 kb on + strandat 14.329 kb on - strandat 14.329 kb on - strandat 14.332 kb on - strandat 14.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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11,213 - AZOBR_RS22310 0.36 +0.8
11,429 - AZOBR_RS22310 0.55 +1.8
11,958 - +0.4
12,059 - -0.5
12,059 - -0.1
12,449 - AZOBR_RS22315 0.17 -3.2
12,547 + AZOBR_RS22315 0.24 -1.3
12,547 + AZOBR_RS22315 0.24 +0.7
12,547 + AZOBR_RS22315 0.24 +0.2
12,548 - AZOBR_RS22315 0.24 +0.7
12,548 - AZOBR_RS22315 0.24 -0.5
12,548 - AZOBR_RS22315 0.24 +0.3
12,631 + AZOBR_RS22315 0.29 +0.5
12,631 + AZOBR_RS22315 0.29 +0.5
12,632 - AZOBR_RS22315 0.29 -0.3
12,632 - AZOBR_RS22315 0.29 -3.1
13,706 + +0.4
13,707 - +0.2
14,295 + -0.2
14,295 + -0.5
14,296 - +3.7
14,296 - +1.9
14,304 + -0.1
14,328 + -0.8
14,328 + +0.8
14,329 - +2.4
14,329 - +0.4
14,332 - -1.6
14,332 - +1.1

Or see this region's nucleotide sequence