Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22300

Experiment: Paraquat dichloride 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS22295 and AZOBR_RS22300 are separated by 28 nucleotides AZOBR_RS22295: AZOBR_RS22295 - methylcrotonoyl-CoA carboxylase, at 6,675 to 8,282 _RS22295 AZOBR_RS22300: AZOBR_RS22300 - acyl-CoA dehydrogenase, at 8,311 to 9,444 _RS22300 Position (kb) 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 7.433 kb on - strand, within AZOBR_RS22295at 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.313 kb on - strandat 8.367 kb on - strandat 8.394 kb on - strandat 8.394 kb on - strandat 8.661 kb on - strand, within AZOBR_RS22300at 8.797 kb on - strandat 9.511 kb on - strandat 9.543 kb on - strandat 9.543 kb on - strandat 10.210 kb on - strandat 10.379 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
remove
7,433 - AZOBR_RS22295 0.47 +1.8
8,313 - +0.4
8,313 - -0.3
8,313 - -3.0
8,313 - +0.1
8,313 - +0.3
8,367 - -0.7
8,394 - -0.9
8,394 - +0.0
8,661 - AZOBR_RS22300 0.31 +0.3
8,797 - -0.5
9,511 - +0.3
9,543 - +1.1
9,543 - -2.3
10,210 - +0.6
10,379 - +2.7

Or see this region's nucleotide sequence