Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21735

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21725 and AZOBR_RS21730 are separated by 45 nucleotidesAZOBR_RS21730 and AZOBR_RS21735 overlap by 4 nucleotidesAZOBR_RS21735 and AZOBR_RS21740 are separated by 43 nucleotides AZOBR_RS21725: AZOBR_RS21725 - imidazolonepropionase, at 1,650,274 to 1,651,488 _RS21725 AZOBR_RS21730: AZOBR_RS21730 - hypothetical protein, at 1,651,534 to 1,651,782 _RS21730 AZOBR_RS21735: AZOBR_RS21735 - hypothetical protein, at 1,651,779 to 1,652,204 _RS21735 AZOBR_RS21740: AZOBR_RS21740 - urocanate hydratase, at 1,652,248 to 1,653,936 _RS21740 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1650.823 kb on + strand, within AZOBR_RS21725at 1650.823 kb on + strand, within AZOBR_RS21725at 1650.824 kb on - strand, within AZOBR_RS21725at 1650.824 kb on - strand, within AZOBR_RS21725at 1651.027 kb on + strand, within AZOBR_RS21725at 1651.028 kb on - strand, within AZOBR_RS21725at 1651.028 kb on - strand, within AZOBR_RS21725at 1651.130 kb on - strand, within AZOBR_RS21725at 1651.418 kb on - strandat 1651.508 kb on + strandat 1651.509 kb on - strandat 1651.796 kb on + strandat 1651.797 kb on - strandat 1651.990 kb on - strand, within AZOBR_RS21735at 1651.990 kb on - strand, within AZOBR_RS21735at 1652.064 kb on + strand, within AZOBR_RS21735at 1652.064 kb on + strand, within AZOBR_RS21735at 1652.404 kb on + strandat 1652.635 kb on + strand, within AZOBR_RS21740at 1652.635 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.666 kb on - strand, within AZOBR_RS21740at 1652.666 kb on - strand, within AZOBR_RS21740at 1652.698 kb on + strand, within AZOBR_RS21740at 1652.698 kb on + strand, within AZOBR_RS21740at 1652.699 kb on - strand, within AZOBR_RS21740at 1652.699 kb on - strand, within AZOBR_RS21740at 1652.881 kb on + strand, within AZOBR_RS21740at 1653.085 kb on + strand, within AZOBR_RS21740

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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1,650,823 + AZOBR_RS21725 0.45 -2.9
1,650,823 + AZOBR_RS21725 0.45 +0.4
1,650,824 - AZOBR_RS21725 0.45 -1.5
1,650,824 - AZOBR_RS21725 0.45 -0.5
1,651,027 + AZOBR_RS21725 0.62 +0.8
1,651,028 - AZOBR_RS21725 0.62 +0.4
1,651,028 - AZOBR_RS21725 0.62 -0.1
1,651,130 - AZOBR_RS21725 0.70 -0.1
1,651,418 - -1.7
1,651,508 + +1.0
1,651,509 - +1.0
1,651,796 + +1.0
1,651,797 - +0.2
1,651,990 - AZOBR_RS21735 0.50 -0.5
1,651,990 - AZOBR_RS21735 0.50 -1.0
1,652,064 + AZOBR_RS21735 0.67 +0.3
1,652,064 + AZOBR_RS21735 0.67 +2.2
1,652,404 + +0.7
1,652,635 + AZOBR_RS21740 0.23 -1.0
1,652,635 + AZOBR_RS21740 0.23 +0.3
1,652,665 + AZOBR_RS21740 0.25 +0.3
1,652,665 + AZOBR_RS21740 0.25 -3.8
1,652,665 + AZOBR_RS21740 0.25 +1.9
1,652,665 + AZOBR_RS21740 0.25 +0.1
1,652,666 - AZOBR_RS21740 0.25 -0.4
1,652,666 - AZOBR_RS21740 0.25 -0.2
1,652,698 + AZOBR_RS21740 0.27 +0.8
1,652,698 + AZOBR_RS21740 0.27 -0.1
1,652,699 - AZOBR_RS21740 0.27 +0.3
1,652,699 - AZOBR_RS21740 0.27 +0.6
1,652,881 + AZOBR_RS21740 0.37 -0.1
1,653,085 + AZOBR_RS21740 0.50 -0.3

Or see this region's nucleotide sequence