Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18535 and AZOBR_RS18540 are separated by 102 nucleotides AZOBR_RS18540 and AZOBR_RS18545 are separated by 194 nucleotides AZOBR_RS18545 and AZOBR_RS18550 are separated by 19 nucleotides
AZOBR_RS18535: AZOBR_RS18535 - LysR family transcriptional regulator, at 927,352 to 928,260
_RS18535
AZOBR_RS18540: AZOBR_RS18540 - endoribonuclease L-PSP, at 928,363 to 928,761
_RS18540
AZOBR_RS18545: AZOBR_RS18545 - putative two-component response regulator:antitermination factor NasT, at 928,956 to 929,573
_RS18545
AZOBR_RS18550: AZOBR_RS18550 - ABC transporter for nitrate, ATPase component <small>(from data)</small>, at 929,593 to 931,257
_RS18550
Position (kb) 928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 927.440 kb on + strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.536 kb on + strand, within AZOBR_RS18535 at 927.536 kb on + strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 928.324 kb on + strand at 928.325 kb on - strand at 928.325 kb on - strand at 928.423 kb on + strand, within AZOBR_RS18540 at 929.047 kb on + strand, within AZOBR_RS18545 at 929.660 kb on + strand at 929.661 kb on - strand at 929.664 kb on - strand at 929.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 927,440 + +0.4 927,441 - -2.8 927,441 - +1.0 927,441 - -0.3 927,441 - +0.0 927,536 + AZOBR_RS18535 0.20 +1.5 927,536 + AZOBR_RS18535 0.20 -0.1 927,537 - AZOBR_RS18535 0.20 +0.0 927,537 - AZOBR_RS18535 0.20 +0.4 927,537 - AZOBR_RS18535 0.20 -1.2 927,653 + AZOBR_RS18535 0.33 -4.6 927,653 + AZOBR_RS18535 0.33 -2.5 928,324 + +1.2 928,325 - -0.6 928,325 - -1.0 928,423 + AZOBR_RS18540 0.15 -0.1 929,047 + AZOBR_RS18545 0.15 -0.7 929,660 + +1.0 929,661 - +0.5 929,664 - -0.4 929,725 - -1.2
Or see this region's nucleotide sequence