Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18520 and AZOBR_RS18525 are separated by 40 nucleotides AZOBR_RS18525 and AZOBR_RS18530 are separated by 52 nucleotides AZOBR_RS18530 and AZOBR_RS18535 are separated by 78 nucleotides
AZOBR_RS18520: AZOBR_RS18520 - chromosome partitioning protein, at 925,046 to 925,927
_RS18520
AZOBR_RS18525: AZOBR_RS18525 - uracil-DNA glycosylase, at 925,968 to 926,504
_RS18525
AZOBR_RS18530: AZOBR_RS18530 - hypothetical protein, at 926,557 to 927,273
_RS18530
AZOBR_RS18535: AZOBR_RS18535 - LysR family transcriptional regulator, at 927,352 to 928,260
_RS18535
Position (kb) 926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 926.153 kb on - strand, within AZOBR_RS18525 at 926.153 kb on - strand, within AZOBR_RS18525 at 926.398 kb on + strand, within AZOBR_RS18525 at 926.399 kb on - strand, within AZOBR_RS18525 at 926.558 kb on + strand at 926.985 kb on - strand, within AZOBR_RS18530 at 926.990 kb on + strand, within AZOBR_RS18530 at 926.990 kb on + strand, within AZOBR_RS18530 at 926.991 kb on - strand, within AZOBR_RS18530 at 927.158 kb on + strand, within AZOBR_RS18530 at 927.159 kb on - strand, within AZOBR_RS18530 at 927.307 kb on + strand at 927.308 kb on - strand at 927.308 kb on - strand at 927.440 kb on + strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.441 kb on - strand at 927.536 kb on + strand, within AZOBR_RS18535 at 927.536 kb on + strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.537 kb on - strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535 at 927.653 kb on + strand, within AZOBR_RS18535
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 926,153 - AZOBR_RS18525 0.34 -0.6 926,153 - AZOBR_RS18525 0.34 -1.2 926,398 + AZOBR_RS18525 0.80 -0.6 926,399 - AZOBR_RS18525 0.80 -2.1 926,558 + +0.0 926,985 - AZOBR_RS18530 0.60 -2.0 926,990 + AZOBR_RS18530 0.60 -0.1 926,990 + AZOBR_RS18530 0.60 +0.1 926,991 - AZOBR_RS18530 0.61 +0.6 927,158 + AZOBR_RS18530 0.84 -0.1 927,159 - AZOBR_RS18530 0.84 +0.2 927,307 + -0.7 927,308 - -0.2 927,308 - +0.6 927,440 + +0.4 927,441 - -2.8 927,441 - +1.0 927,441 - -0.3 927,441 - +0.0 927,536 + AZOBR_RS18535 0.20 +1.5 927,536 + AZOBR_RS18535 0.20 -0.1 927,537 - AZOBR_RS18535 0.20 +0.0 927,537 - AZOBR_RS18535 0.20 +0.4 927,537 - AZOBR_RS18535 0.20 -1.2 927,653 + AZOBR_RS18535 0.33 -4.6 927,653 + AZOBR_RS18535 0.33 -2.5
Or see this region's nucleotide sequence