Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18175 and AZOBR_RS18180 are separated by 4 nucleotides AZOBR_RS18180 and AZOBR_RS18185 are separated by 60 nucleotides AZOBR_RS18185 and AZOBR_RS18190 are separated by 400 nucleotides
AZOBR_RS18175: AZOBR_RS18175 - sugar ABC transporter, at 836,263 to 837,150
_RS18175
AZOBR_RS18180: AZOBR_RS18180 - sugar ABC transporter, at 837,155 to 837,976
_RS18180
AZOBR_RS18185: AZOBR_RS18185 - sugar ABC transporter, at 838,037 to 839,191
_RS18185
AZOBR_RS18190: AZOBR_RS18190 - hypothetical protein, at 839,592 to 840,293
_RS18190
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 837.103 kb on + strand at 837.104 kb on - strand at 837.225 kb on - strand at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.773 kb on + strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.774 kb on - strand, within AZOBR_RS18180 at 837.893 kb on + strand, within AZOBR_RS18180 at 837.917 kb on + strand at 837.935 kb on + strand at 837.935 kb on + strand at 837.936 kb on - strand at 837.936 kb on - strand at 838.022 kb on - strand at 838.042 kb on + strand at 838.283 kb on + strand, within AZOBR_RS18185 at 838.284 kb on - strand, within AZOBR_RS18185 at 838.382 kb on + strand, within AZOBR_RS18185 at 838.383 kb on - strand, within AZOBR_RS18185 at 838.652 kb on + strand, within AZOBR_RS18185 at 838.652 kb on + strand, within AZOBR_RS18185 at 838.652 kb on + strand, within AZOBR_RS18185 at 838.653 kb on - strand, within AZOBR_RS18185 at 838.730 kb on + strand, within AZOBR_RS18185 at 838.730 kb on + strand, within AZOBR_RS18185 at 838.751 kb on + strand, within AZOBR_RS18185 at 838.752 kb on - strand, within AZOBR_RS18185 at 838.772 kb on + strand, within AZOBR_RS18185 at 838.772 kb on + strand, within AZOBR_RS18185 at 838.773 kb on - strand, within AZOBR_RS18185 at 838.773 kb on - strand, within AZOBR_RS18185 at 839.082 kb on + strand at 839.082 kb on + strand at 839.082 kb on + strand at 839.083 kb on - strand at 839.267 kb on + strand at 839.267 kb on + strand at 839.268 kb on - strand at 839.381 kb on - strand at 839.427 kb on + strand at 839.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 837,103 + +0.7 837,104 - -0.0 837,225 - -0.6 837,773 + AZOBR_RS18180 0.75 -1.6 837,773 + AZOBR_RS18180 0.75 -0.9 837,773 + AZOBR_RS18180 0.75 +0.0 837,773 + AZOBR_RS18180 0.75 -0.4 837,774 - AZOBR_RS18180 0.75 +0.8 837,774 - AZOBR_RS18180 0.75 +0.0 837,774 - AZOBR_RS18180 0.75 -1.6 837,893 + AZOBR_RS18180 0.90 -0.2 837,917 + +0.9 837,935 + -0.6 837,935 + +0.7 837,936 - -0.9 837,936 - +1.4 838,022 - +0.7 838,042 + +0.7 838,283 + AZOBR_RS18185 0.21 -1.0 838,284 - AZOBR_RS18185 0.21 -2.3 838,382 + AZOBR_RS18185 0.30 +0.7 838,383 - AZOBR_RS18185 0.30 -1.2 838,652 + AZOBR_RS18185 0.53 -0.3 838,652 + AZOBR_RS18185 0.53 -0.0 838,652 + AZOBR_RS18185 0.53 -0.5 838,653 - AZOBR_RS18185 0.53 -0.3 838,730 + AZOBR_RS18185 0.60 -0.2 838,730 + AZOBR_RS18185 0.60 -1.3 838,751 + AZOBR_RS18185 0.62 -1.6 838,752 - AZOBR_RS18185 0.62 +0.3 838,772 + AZOBR_RS18185 0.64 +0.7 838,772 + AZOBR_RS18185 0.64 -1.3 838,773 - AZOBR_RS18185 0.64 -0.7 838,773 - AZOBR_RS18185 0.64 -0.2 839,082 + +0.2 839,082 + +0.5 839,082 + +0.7 839,083 - -1.8 839,267 + -0.6 839,267 + -3.2 839,268 - +0.1 839,381 - -0.4 839,427 + +0.8 839,591 + +0.1
Or see this region's nucleotide sequence