Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17025 and AZOBR_RS17030 are separated by 189 nucleotides AZOBR_RS17030 and AZOBR_RS17035 overlap by 89 nucleotides AZOBR_RS17035 and AZOBR_RS17040 are separated by 118 nucleotides
AZOBR_RS17025: AZOBR_RS17025 - squalene--hopene cyclase, at 573,093 to 575,024
_RS17025
AZOBR_RS17030: AZOBR_RS17030 - hypothetical protein, at 575,214 to 577,871
_RS17030
AZOBR_RS17035: AZOBR_RS17035 - hypothetical protein, at 577,783 to 578,742
_RS17035
AZOBR_RS17040: AZOBR_RS17040 - putative sulfotransferase, at 578,861 to 579,955
_RS17040
Position (kb) 575
576
577
578 Strain fitness (log2 ratio) -1
0
1
2 at 574.855 kb on + strand at 575.065 kb on + strand at 575.065 kb on + strand at 575.066 kb on - strand at 575.066 kb on - strand at 575.108 kb on + strand at 575.108 kb on + strand at 575.113 kb on + strand at 575.113 kb on + strand at 575.113 kb on + strand at 575.113 kb on + strand at 575.114 kb on - strand at 575.114 kb on - strand at 575.123 kb on + strand at 575.124 kb on - strand at 575.178 kb on + strand at 575.179 kb on - strand at 575.179 kb on - strand at 575.323 kb on - strand at 575.364 kb on - strand at 575.406 kb on + strand at 575.407 kb on - strand at 575.491 kb on + strand, within AZOBR_RS17030 at 575.562 kb on + strand, within AZOBR_RS17030 at 575.563 kb on - strand, within AZOBR_RS17030 at 575.563 kb on - strand, within AZOBR_RS17030 at 575.715 kb on - strand, within AZOBR_RS17030 at 576.696 kb on + strand, within AZOBR_RS17030 at 576.696 kb on + strand, within AZOBR_RS17030 at 576.697 kb on - strand, within AZOBR_RS17030 at 577.776 kb on + strand at 577.776 kb on + strand at 577.776 kb on + strand at 577.777 kb on - strand at 578.621 kb on + strand, within AZOBR_RS17035 at 578.622 kb on - strand, within AZOBR_RS17035 at 578.622 kb on - strand, within AZOBR_RS17035 at 578.622 kb on - strand, within AZOBR_RS17035 at 578.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 574,855 + +1.9 575,065 + -0.1 575,065 + -0.3 575,066 - -1.4 575,066 - -0.4 575,108 + +0.3 575,108 + -0.4 575,113 + -0.5 575,113 + -1.0 575,113 + -0.6 575,113 + +0.1 575,114 - -0.3 575,114 - -0.0 575,123 + +0.5 575,124 - -0.5 575,178 + +1.6 575,179 - -0.3 575,179 - -0.4 575,323 - -0.5 575,364 - +0.4 575,406 + +0.2 575,407 - +0.0 575,491 + AZOBR_RS17030 0.10 +0.1 575,562 + AZOBR_RS17030 0.13 +0.4 575,563 - AZOBR_RS17030 0.13 +0.0 575,563 - AZOBR_RS17030 0.13 -0.3 575,715 - AZOBR_RS17030 0.19 +0.8 576,696 + AZOBR_RS17030 0.56 -1.1 576,696 + AZOBR_RS17030 0.56 -0.1 576,697 - AZOBR_RS17030 0.56 -0.3 577,776 + -1.0 577,776 + -1.0 577,776 + -0.4 577,777 - +0.9 578,621 + AZOBR_RS17035 0.87 -0.1 578,622 - AZOBR_RS17035 0.87 +0.4 578,622 - AZOBR_RS17035 0.87 +2.3 578,622 - AZOBR_RS17035 0.87 +1.6 578,655 - +0.0
Or see this region's nucleotide sequence