Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16420 and AZOBR_RS16425 are separated by 217 nucleotides AZOBR_RS16425 and AZOBR_RS16430 are separated by 140 nucleotides
AZOBR_RS16420: AZOBR_RS16420 - excinuclease ABC subunit B, at 432,203 to 434,341
_RS16420
AZOBR_RS16425: AZOBR_RS16425 - branched-chain amino acid aminotransferase, at 434,559 to 435,431
_RS16425
AZOBR_RS16430: AZOBR_RS16430 - MarR family transcriptional regulator, at 435,572 to 436,084
_RS16430
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.746 kb on + strand, within AZOBR_RS16420 at 433.746 kb on + strand, within AZOBR_RS16420 at 433.747 kb on - strand, within AZOBR_RS16420 at 433.747 kb on - strand, within AZOBR_RS16420 at 433.828 kb on - strand, within AZOBR_RS16420 at 433.851 kb on + strand, within AZOBR_RS16420 at 433.852 kb on - strand, within AZOBR_RS16420 at 433.852 kb on - strand, within AZOBR_RS16420 at 434.382 kb on + strand at 434.382 kb on + strand at 434.382 kb on + strand at 434.383 kb on - strand at 434.383 kb on - strand at 434.384 kb on + strand at 434.384 kb on + strand at 434.384 kb on + strand at 434.384 kb on + strand at 434.385 kb on - strand at 434.385 kb on - strand at 434.480 kb on + strand at 434.480 kb on + strand at 434.481 kb on - strand at 434.481 kb on - strand at 434.582 kb on - strand at 434.785 kb on - strand, within AZOBR_RS16425 at 434.896 kb on + strand, within AZOBR_RS16425 at 434.941 kb on + strand, within AZOBR_RS16425 at 434.941 kb on + strand, within AZOBR_RS16425 at 434.942 kb on - strand, within AZOBR_RS16425 at 434.942 kb on - strand, within AZOBR_RS16425 at 435.046 kb on + strand, within AZOBR_RS16425 at 435.047 kb on - strand, within AZOBR_RS16425 at 435.145 kb on + strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.293 kb on - strand, within AZOBR_RS16425 at 435.388 kb on + strand at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.651 kb on - strand, within AZOBR_RS16430 at 435.657 kb on - strand, within AZOBR_RS16430 at 435.731 kb on + strand, within AZOBR_RS16430 at 435.732 kb on - strand, within AZOBR_RS16430 at 436.296 kb on + strand at 436.296 kb on + strand at 436.296 kb on + strand at 436.339 kb on + strand at 436.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 433,746 + AZOBR_RS16420 0.72 -2.6 433,746 + AZOBR_RS16420 0.72 +0.3 433,747 - AZOBR_RS16420 0.72 -2.9 433,747 - AZOBR_RS16420 0.72 -0.3 433,828 - AZOBR_RS16420 0.76 +0.2 433,851 + AZOBR_RS16420 0.77 -2.3 433,852 - AZOBR_RS16420 0.77 +1.0 433,852 - AZOBR_RS16420 0.77 +0.2 434,382 + -1.0 434,382 + -3.3 434,382 + -0.7 434,383 - -1.0 434,383 - +0.5 434,384 + -0.6 434,384 + +0.4 434,384 + -0.2 434,384 + +0.3 434,385 - +0.2 434,385 - -0.1 434,480 + -0.1 434,480 + +0.4 434,481 - +0.2 434,481 - -2.4 434,582 - -0.2 434,785 - AZOBR_RS16425 0.26 -0.8 434,896 + AZOBR_RS16425 0.39 +0.3 434,941 + AZOBR_RS16425 0.44 -0.3 434,941 + AZOBR_RS16425 0.44 -0.1 434,942 - AZOBR_RS16425 0.44 +0.1 434,942 - AZOBR_RS16425 0.44 +0.0 435,046 + AZOBR_RS16425 0.56 -0.7 435,047 - AZOBR_RS16425 0.56 -0.9 435,145 + AZOBR_RS16425 0.67 -1.5 435,146 - AZOBR_RS16425 0.67 +0.2 435,146 - AZOBR_RS16425 0.67 -1.7 435,146 - AZOBR_RS16425 0.67 -1.5 435,146 - AZOBR_RS16425 0.67 -0.1 435,146 - AZOBR_RS16425 0.67 +0.5 435,293 - AZOBR_RS16425 0.84 -0.7 435,388 + +1.1 435,650 + AZOBR_RS16430 0.15 +0.3 435,650 + AZOBR_RS16430 0.15 -2.2 435,650 + AZOBR_RS16430 0.15 +0.8 435,650 + AZOBR_RS16430 0.15 -0.5 435,650 + AZOBR_RS16430 0.15 -0.4 435,651 - AZOBR_RS16430 0.15 +0.7 435,657 - AZOBR_RS16430 0.17 +0.9 435,731 + AZOBR_RS16430 0.31 +0.3 435,732 - AZOBR_RS16430 0.31 +1.4 436,296 + -0.2 436,296 + +0.5 436,296 + +1.0 436,339 + +0.4 436,340 - -1.3
Or see this region's nucleotide sequence