Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16385 and AZOBR_RS16390 are separated by 68 nucleotides AZOBR_RS16390 and AZOBR_RS16395 are separated by 201 nucleotides AZOBR_RS16395 and AZOBR_RS16400 are separated by 106 nucleotides
AZOBR_RS16385: AZOBR_RS16385 - aminopeptidase A, at 424,385 to 425,887
_RS16385
AZOBR_RS16390: AZOBR_RS16390 - DNA polymerase III subunit chi, at 425,956 to 426,405
_RS16390
AZOBR_RS16395: AZOBR_RS16395 - histidine kinase, at 426,607 to 427,809
_RS16395
AZOBR_RS16400: AZOBR_RS16400 - MFS transporter, at 427,916 to 429,232
_RS16400
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.870 kb on + strand at 425.885 kb on + strand at 425.885 kb on + strand at 425.885 kb on + strand at 425.885 kb on + strand at 426.448 kb on - strand at 426.466 kb on + strand at 426.466 kb on + strand at 426.466 kb on + strand at 426.466 kb on + strand at 426.467 kb on - strand at 426.467 kb on - strand at 426.467 kb on - strand at 426.727 kb on + strand at 426.866 kb on - strand, within AZOBR_RS16395 at 426.866 kb on - strand, within AZOBR_RS16395 at 426.866 kb on - strand, within AZOBR_RS16395 at 426.866 kb on - strand, within AZOBR_RS16395 at 426.877 kb on + strand, within AZOBR_RS16395 at 426.877 kb on + strand, within AZOBR_RS16395 at 426.878 kb on - strand, within AZOBR_RS16395 at 426.878 kb on - strand, within AZOBR_RS16395 at 426.878 kb on - strand, within AZOBR_RS16395 at 427.027 kb on + strand, within AZOBR_RS16395 at 427.028 kb on - strand, within AZOBR_RS16395 at 427.246 kb on + strand, within AZOBR_RS16395 at 427.246 kb on + strand, within AZOBR_RS16395 at 427.246 kb on + strand, within AZOBR_RS16395 at 427.247 kb on - strand, within AZOBR_RS16395 at 427.247 kb on - strand, within AZOBR_RS16395 at 427.255 kb on + strand, within AZOBR_RS16395 at 427.255 kb on + strand, within AZOBR_RS16395 at 427.255 kb on + strand, within AZOBR_RS16395 at 427.255 kb on + strand, within AZOBR_RS16395 at 427.255 kb on + strand, within AZOBR_RS16395 at 427.256 kb on - strand, within AZOBR_RS16395 at 427.256 kb on - strand, within AZOBR_RS16395 at 427.256 kb on - strand, within AZOBR_RS16395 at 427.852 kb on + strand at 427.853 kb on - strand at 428.038 kb on + strand at 428.148 kb on + strand, within AZOBR_RS16400 at 428.149 kb on - strand, within AZOBR_RS16400 at 428.149 kb on - strand, within AZOBR_RS16400 at 428.271 kb on + strand, within AZOBR_RS16400 at 428.272 kb on - strand, within AZOBR_RS16400 at 428.272 kb on - strand, within AZOBR_RS16400 at 428.272 kb on - strand, within AZOBR_RS16400
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 425,870 + +0.5 425,885 + +0.1 425,885 + -0.1 425,885 + -0.5 425,885 + +0.3 426,448 - -0.6 426,466 + -0.1 426,466 + +0.4 426,466 + -1.8 426,466 + +0.3 426,467 - +0.4 426,467 - -0.6 426,467 - -0.6 426,727 + +0.5 426,866 - AZOBR_RS16395 0.22 -0.1 426,866 - AZOBR_RS16395 0.22 -0.7 426,866 - AZOBR_RS16395 0.22 -0.5 426,866 - AZOBR_RS16395 0.22 +0.0 426,877 + AZOBR_RS16395 0.22 -3.3 426,877 + AZOBR_RS16395 0.22 -0.1 426,878 - AZOBR_RS16395 0.23 +1.5 426,878 - AZOBR_RS16395 0.23 +0.0 426,878 - AZOBR_RS16395 0.23 -1.8 427,027 + AZOBR_RS16395 0.35 -0.6 427,028 - AZOBR_RS16395 0.35 -0.0 427,246 + AZOBR_RS16395 0.53 -1.9 427,246 + AZOBR_RS16395 0.53 +0.8 427,246 + AZOBR_RS16395 0.53 -0.5 427,247 - AZOBR_RS16395 0.53 -0.1 427,247 - AZOBR_RS16395 0.53 -2.6 427,255 + AZOBR_RS16395 0.54 -0.8 427,255 + AZOBR_RS16395 0.54 -0.3 427,255 + AZOBR_RS16395 0.54 +0.8 427,255 + AZOBR_RS16395 0.54 -0.7 427,255 + AZOBR_RS16395 0.54 +0.1 427,256 - AZOBR_RS16395 0.54 +0.3 427,256 - AZOBR_RS16395 0.54 -1.3 427,256 - AZOBR_RS16395 0.54 +1.0 427,852 + -1.7 427,853 - -0.0 428,038 + +0.1 428,148 + AZOBR_RS16400 0.18 -0.8 428,149 - AZOBR_RS16400 0.18 +0.8 428,149 - AZOBR_RS16400 0.18 +0.1 428,271 + AZOBR_RS16400 0.27 +1.2 428,272 - AZOBR_RS16400 0.27 +0.1 428,272 - AZOBR_RS16400 0.27 +0.4 428,272 - AZOBR_RS16400 0.27 +2.0
Or see this region's nucleotide sequence