Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16380 and AZOBR_RS16385 are separated by 226 nucleotides AZOBR_RS16385 and AZOBR_RS16390 are separated by 68 nucleotides AZOBR_RS16390 and AZOBR_RS16395 are separated by 201 nucleotides
AZOBR_RS16380: AZOBR_RS16380 - permease, at 423,064 to 424,158
_RS16380
AZOBR_RS16385: AZOBR_RS16385 - aminopeptidase A, at 424,385 to 425,887
_RS16385
AZOBR_RS16390: AZOBR_RS16390 - DNA polymerase III subunit chi, at 425,956 to 426,405
_RS16390
AZOBR_RS16395: AZOBR_RS16395 - histidine kinase, at 426,607 to 427,809
_RS16395
Position (kb) 424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 424.234 kb on - strand at 424.234 kb on - strand at 424.234 kb on - strand at 424.234 kb on - strand at 424.238 kb on - strand at 424.299 kb on + strand at 425.459 kb on + strand, within AZOBR_RS16385 at 425.870 kb on + strand at 425.885 kb on + strand at 425.885 kb on + strand at 425.885 kb on + strand at 425.885 kb on + strand at 426.448 kb on - strand at 426.466 kb on + strand at 426.466 kb on + strand at 426.466 kb on + strand at 426.466 kb on + strand at 426.467 kb on - strand at 426.467 kb on - strand at 426.467 kb on - strand at 426.727 kb on + strand at 426.866 kb on - strand, within AZOBR_RS16395 at 426.866 kb on - strand, within AZOBR_RS16395 at 426.866 kb on - strand, within AZOBR_RS16395 at 426.866 kb on - strand, within AZOBR_RS16395 at 426.877 kb on + strand, within AZOBR_RS16395 at 426.877 kb on + strand, within AZOBR_RS16395 at 426.878 kb on - strand, within AZOBR_RS16395 at 426.878 kb on - strand, within AZOBR_RS16395 at 426.878 kb on - strand, within AZOBR_RS16395
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 424,234 - +0.3 424,234 - +0.6 424,234 - +0.9 424,234 - +1.2 424,238 - +0.8 424,299 + +1.0 425,459 + AZOBR_RS16385 0.71 -0.3 425,870 + +0.5 425,885 + +0.1 425,885 + -0.1 425,885 + -0.5 425,885 + +0.3 426,448 - -0.6 426,466 + -0.1 426,466 + +0.4 426,466 + -1.8 426,466 + +0.3 426,467 - +0.4 426,467 - -0.6 426,467 - -0.6 426,727 + +0.5 426,866 - AZOBR_RS16395 0.22 -0.1 426,866 - AZOBR_RS16395 0.22 -0.7 426,866 - AZOBR_RS16395 0.22 -0.5 426,866 - AZOBR_RS16395 0.22 +0.0 426,877 + AZOBR_RS16395 0.22 -3.3 426,877 + AZOBR_RS16395 0.22 -0.1 426,878 - AZOBR_RS16395 0.23 +1.5 426,878 - AZOBR_RS16395 0.23 +0.0 426,878 - AZOBR_RS16395 0.23 -1.8
Or see this region's nucleotide sequence