Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15605 and AZOBR_RS15610 overlap by 4 nucleotides AZOBR_RS15610 and AZOBR_RS15615 are separated by 108 nucleotides AZOBR_RS15615 and AZOBR_RS15620 are separated by 129 nucleotides
AZOBR_RS15605: AZOBR_RS15605 - ABC transporter permease, at 257,900 to 258,898
_RS15605
AZOBR_RS15610: AZOBR_RS15610 - ABC transporter permease, at 258,895 to 259,767
_RS15610
AZOBR_RS15615: AZOBR_RS15615 - ABC transporter substrate-binding protein, at 259,876 to 261,084
_RS15615
AZOBR_RS15620: AZOBR_RS15620 - GntR family transcriptional regulator, at 261,214 to 262,008
_RS15620
Position (kb) 259
260
261
262 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 259.124 kb on + strand, within AZOBR_RS15610 at 259.124 kb on + strand, within AZOBR_RS15610 at 259.125 kb on - strand, within AZOBR_RS15610 at 259.125 kb on - strand, within AZOBR_RS15610 at 259.194 kb on - strand, within AZOBR_RS15610 at 259.194 kb on - strand, within AZOBR_RS15610 at 259.194 kb on - strand, within AZOBR_RS15610 at 259.385 kb on + strand, within AZOBR_RS15610 at 259.575 kb on - strand, within AZOBR_RS15610 at 259.673 kb on + strand, within AZOBR_RS15610 at 259.706 kb on + strand at 259.707 kb on - strand at 259.707 kb on - strand at 259.763 kb on + strand at 259.763 kb on + strand at 259.763 kb on + strand at 259.763 kb on + strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.764 kb on - strand at 259.839 kb on - strand at 259.889 kb on + strand at 259.889 kb on + strand at 260.120 kb on + strand, within AZOBR_RS15615 at 260.139 kb on - strand, within AZOBR_RS15615 at 260.139 kb on - strand, within AZOBR_RS15615 at 260.297 kb on + strand, within AZOBR_RS15615 at 260.364 kb on - strand, within AZOBR_RS15615 at 260.364 kb on - strand, within AZOBR_RS15615 at 260.424 kb on + strand, within AZOBR_RS15615 at 260.425 kb on - strand, within AZOBR_RS15615 at 260.697 kb on - strand, within AZOBR_RS15615 at 260.697 kb on - strand, within AZOBR_RS15615 at 261.542 kb on + strand, within AZOBR_RS15620 at 261.581 kb on + strand, within AZOBR_RS15620 at 261.582 kb on - strand, within AZOBR_RS15620 at 262.042 kb on + strand at 262.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 259,124 + AZOBR_RS15610 0.26 -0.4 259,124 + AZOBR_RS15610 0.26 +0.4 259,125 - AZOBR_RS15610 0.26 +0.6 259,125 - AZOBR_RS15610 0.26 +0.5 259,194 - AZOBR_RS15610 0.34 +0.1 259,194 - AZOBR_RS15610 0.34 -1.9 259,194 - AZOBR_RS15610 0.34 -3.4 259,385 + AZOBR_RS15610 0.56 +0.5 259,575 - AZOBR_RS15610 0.78 -0.0 259,673 + AZOBR_RS15610 0.89 -0.7 259,706 + +0.6 259,707 - -2.2 259,707 - +0.8 259,763 + -0.0 259,763 + -0.6 259,763 + +1.2 259,763 + -1.6 259,764 - -4.0 259,764 - +0.6 259,764 - -0.3 259,764 - -0.1 259,764 - +0.2 259,839 - -2.6 259,889 + +0.9 259,889 + -0.1 260,120 + AZOBR_RS15615 0.20 -3.5 260,139 - AZOBR_RS15615 0.22 -0.0 260,139 - AZOBR_RS15615 0.22 -0.8 260,297 + AZOBR_RS15615 0.35 -1.4 260,364 - AZOBR_RS15615 0.40 -0.4 260,364 - AZOBR_RS15615 0.40 -1.4 260,424 + AZOBR_RS15615 0.45 -0.0 260,425 - AZOBR_RS15615 0.45 -0.0 260,697 - AZOBR_RS15615 0.68 -0.2 260,697 - AZOBR_RS15615 0.68 -1.6 261,542 + AZOBR_RS15620 0.41 -0.5 261,581 + AZOBR_RS15620 0.46 -0.3 261,582 - AZOBR_RS15620 0.46 -2.5 262,042 + +0.2 262,042 + -2.6
Or see this region's nucleotide sequence