Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS11895 and AZOBR_RS11900 are separated by 25 nucleotides AZOBR_RS11900 and AZOBR_RS11905 are separated by 141 nucleotides AZOBR_RS11905 and AZOBR_RS11910 are separated by 2 nucleotides
AZOBR_RS11895: AZOBR_RS11895 - 4-hydroxybenzoate polyprenyltransferase, at 2,502,358 to 2,503,242
_RS11895
AZOBR_RS11900: AZOBR_RS11900 - hypothetical protein, at 2,503,268 to 2,504,104
_RS11900
AZOBR_RS11905: AZOBR_RS11905 - 50S ribosomal protein L11 methyltransferase, at 2,504,246 to 2,504,905
_RS11905
AZOBR_RS11910: AZOBR_RS11910 - DNA alkylation repair protein, at 2,504,908 to 2,505,684
_RS11910
Position (kb)
2503
2504
2505 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2502.273 kb on + strand at 2503.671 kb on + strand, within AZOBR_RS11900 at 2503.681 kb on - strand, within AZOBR_RS11900 at 2503.927 kb on - strand, within AZOBR_RS11900 at 2503.927 kb on - strand, within AZOBR_RS11900 at 2503.927 kb on - strand, within AZOBR_RS11900 at 2504.036 kb on + strand at 2504.105 kb on - strand at 2504.168 kb on - strand at 2504.182 kb on - strand at 2504.182 kb on - strand at 2504.185 kb on + strand at 2504.185 kb on + strand at 2504.205 kb on + strand at 2504.206 kb on - strand at 2504.246 kb on - strand at 2504.293 kb on - strand at 2504.392 kb on - strand, within AZOBR_RS11905 at 2504.789 kb on + strand, within AZOBR_RS11905 at 2504.789 kb on + strand, within AZOBR_RS11905 at 2504.790 kb on - strand, within AZOBR_RS11905 at 2504.790 kb on - strand, within AZOBR_RS11905 at 2504.825 kb on + strand, within AZOBR_RS11905 at 2504.826 kb on - strand, within AZOBR_RS11905 at 2504.826 kb on - strand, within AZOBR_RS11905
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 2,502,273 + -0.5 2,503,671 + AZOBR_RS11900 0.48 +0.1 2,503,681 - AZOBR_RS11900 0.49 +1.1 2,503,927 - AZOBR_RS11900 0.79 -1.8 2,503,927 - AZOBR_RS11900 0.79 +0.5 2,503,927 - AZOBR_RS11900 0.79 +0.5 2,504,036 + -0.0 2,504,105 - -0.7 2,504,168 - +2.1 2,504,182 - -0.3 2,504,182 - -0.3 2,504,185 + +0.6 2,504,185 + +0.5 2,504,205 + -4.1 2,504,206 - -0.0 2,504,246 - -0.4 2,504,293 - +0.2 2,504,392 - AZOBR_RS11905 0.22 +0.3 2,504,789 + AZOBR_RS11905 0.82 +2.8 2,504,789 + AZOBR_RS11905 0.82 +0.8 2,504,790 - AZOBR_RS11905 0.82 -1.3 2,504,790 - AZOBR_RS11905 0.82 -2.5 2,504,825 + AZOBR_RS11905 0.88 -0.8 2,504,826 - AZOBR_RS11905 0.88 -0.4 2,504,826 - AZOBR_RS11905 0.88 -0.9
Or see this region's nucleotide sequence