Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS11880 and AZOBR_RS11885 are separated by 169 nucleotides AZOBR_RS11885 and AZOBR_RS11890 are separated by 81 nucleotides
AZOBR_RS11880: AZOBR_RS11880 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,498,618 to 2,499,772
_RS11880
AZOBR_RS11885: AZOBR_RS11885 - glutamate--cysteine ligase, at 2,499,942 to 2,501,306
_RS11885
AZOBR_RS11890: AZOBR_RS11890 - 16S rRNA methyltransferase, at 2,501,388 to 2,502,182
_RS11890
Position (kb)
2499
2500
2501
2502 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2498.997 kb on - strand, within AZOBR_RS11880 at 2499.236 kb on + strand, within AZOBR_RS11880 at 2499.236 kb on + strand, within AZOBR_RS11880 at 2499.237 kb on - strand, within AZOBR_RS11880 at 2499.321 kb on - strand, within AZOBR_RS11880 at 2499.321 kb on - strand, within AZOBR_RS11880 at 2499.572 kb on + strand, within AZOBR_RS11880 at 2499.572 kb on + strand, within AZOBR_RS11880 at 2499.572 kb on + strand, within AZOBR_RS11880 at 2499.572 kb on + strand, within AZOBR_RS11880 at 2499.572 kb on + strand, within AZOBR_RS11880 at 2499.573 kb on - strand, within AZOBR_RS11880 at 2499.573 kb on - strand, within AZOBR_RS11880 at 2499.573 kb on - strand, within AZOBR_RS11880 at 2499.579 kb on - strand, within AZOBR_RS11880 at 2499.771 kb on - strand at 2499.771 kb on - strand at 2499.947 kb on - strand at 2499.947 kb on - strand at 2499.952 kb on + strand at 2501.661 kb on + strand, within AZOBR_RS11890 at 2501.661 kb on + strand, within AZOBR_RS11890 at 2501.662 kb on - strand, within AZOBR_RS11890 at 2501.662 kb on - strand, within AZOBR_RS11890 at 2501.662 kb on - strand, within AZOBR_RS11890 at 2501.686 kb on + strand, within AZOBR_RS11890 at 2501.693 kb on + strand, within AZOBR_RS11890 at 2501.693 kb on + strand, within AZOBR_RS11890 at 2501.693 kb on + strand, within AZOBR_RS11890 at 2501.693 kb on + strand, within AZOBR_RS11890 at 2501.694 kb on - strand, within AZOBR_RS11890 at 2501.694 kb on - strand, within AZOBR_RS11890 at 2502.154 kb on + strand at 2502.154 kb on + strand at 2502.154 kb on + strand at 2502.154 kb on + strand at 2502.154 kb on + strand at 2502.214 kb on - strand at 2502.214 kb on - strand at 2502.215 kb on + strand at 2502.216 kb on - strand at 2502.216 kb on - strand at 2502.216 kb on - strand at 2502.221 kb on + strand at 2502.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 2,498,997 - AZOBR_RS11880 0.33 +1.1 2,499,236 + AZOBR_RS11880 0.54 +1.4 2,499,236 + AZOBR_RS11880 0.54 +0.9 2,499,237 - AZOBR_RS11880 0.54 +0.5 2,499,321 - AZOBR_RS11880 0.61 +0.9 2,499,321 - AZOBR_RS11880 0.61 +0.8 2,499,572 + AZOBR_RS11880 0.83 -0.2 2,499,572 + AZOBR_RS11880 0.83 -0.4 2,499,572 + AZOBR_RS11880 0.83 -0.5 2,499,572 + AZOBR_RS11880 0.83 -0.1 2,499,572 + AZOBR_RS11880 0.83 -0.1 2,499,573 - AZOBR_RS11880 0.83 -1.8 2,499,573 - AZOBR_RS11880 0.83 -0.8 2,499,573 - AZOBR_RS11880 0.83 -1.1 2,499,579 - AZOBR_RS11880 0.83 -0.5 2,499,771 - -1.0 2,499,771 - -0.6 2,499,947 - -1.1 2,499,947 - -0.6 2,499,952 + +0.4 2,501,661 + AZOBR_RS11890 0.34 -0.4 2,501,661 + AZOBR_RS11890 0.34 +0.2 2,501,662 - AZOBR_RS11890 0.34 +0.9 2,501,662 - AZOBR_RS11890 0.34 +0.3 2,501,662 - AZOBR_RS11890 0.34 +2.7 2,501,686 + AZOBR_RS11890 0.37 +1.2 2,501,693 + AZOBR_RS11890 0.38 +0.1 2,501,693 + AZOBR_RS11890 0.38 +1.1 2,501,693 + AZOBR_RS11890 0.38 +0.4 2,501,693 + AZOBR_RS11890 0.38 +0.7 2,501,694 - AZOBR_RS11890 0.38 +1.6 2,501,694 - AZOBR_RS11890 0.38 -0.2 2,502,154 + +0.8 2,502,154 + +0.5 2,502,154 + -0.4 2,502,154 + +0.8 2,502,154 + +0.7 2,502,214 - +2.2 2,502,214 - +0.3 2,502,215 + +0.7 2,502,216 - +0.5 2,502,216 - +0.4 2,502,216 - -0.5 2,502,221 + +1.6 2,502,273 + -0.5
Or see this region's nucleotide sequence