Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08675 and AZOBR_RS08680 are separated by 55 nucleotides AZOBR_RS08680 and AZOBR_RS08685 are separated by 52 nucleotides AZOBR_RS08685 and AZOBR_RS08690 overlap by 25 nucleotides AZOBR_RS08690 and AZOBR_RS08695 overlap by 4 nucleotides
AZOBR_RS08675: AZOBR_RS08675 - histidinol phosphate aminotransferase, at 1,816,715 to 1,817,800
_RS08675
AZOBR_RS08680: AZOBR_RS08680 - multidrug DMT transporter permease, at 1,817,856 to 1,818,689
_RS08680
AZOBR_RS08685: AZOBR_RS08685 - GNAT family acetyltransferase, at 1,818,742 to 1,819,383
_RS08685
AZOBR_RS08690: AZOBR_RS08690 - acetyltransferase, at 1,819,359 to 1,819,793
_RS08690
AZOBR_RS08695: AZOBR_RS08695 - 3-mercaptopyruvate sulfurtransferase, at 1,819,790 to 1,820,653
_RS08695
Position (kb) 1818
1819
1820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1818.575 kb on - strand, within AZOBR_RS08680 at 1818.998 kb on + strand, within AZOBR_RS08685 at 1818.999 kb on - strand, within AZOBR_RS08685 at 1819.065 kb on - strand, within AZOBR_RS08685 at 1819.065 kb on - strand, within AZOBR_RS08685 at 1819.065 kb on - strand, within AZOBR_RS08685 at 1819.065 kb on - strand, within AZOBR_RS08685 at 1819.065 kb on - strand, within AZOBR_RS08685 at 1819.170 kb on - strand, within AZOBR_RS08685 at 1819.170 kb on - strand, within AZOBR_RS08685 at 1819.182 kb on - strand, within AZOBR_RS08685 at 1819.182 kb on - strand, within AZOBR_RS08685 at 1819.184 kb on + strand, within AZOBR_RS08685 at 1819.185 kb on - strand, within AZOBR_RS08685 at 1819.277 kb on + strand, within AZOBR_RS08685 at 1819.277 kb on + strand, within AZOBR_RS08685 at 1819.429 kb on + strand, within AZOBR_RS08690 at 1819.570 kb on + strand, within AZOBR_RS08690 at 1819.571 kb on - strand, within AZOBR_RS08690 at 1819.573 kb on + strand, within AZOBR_RS08690 at 1819.573 kb on + strand, within AZOBR_RS08690 at 1819.573 kb on + strand, within AZOBR_RS08690 at 1819.574 kb on - strand, within AZOBR_RS08690 at 1819.765 kb on + strand at 1819.765 kb on + strand at 1819.766 kb on - strand at 1819.875 kb on + strand at 1819.875 kb on + strand at 1819.876 kb on - strand at 1820.127 kb on + strand, within AZOBR_RS08695
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 1,818,575 - AZOBR_RS08680 0.86 +2.9 1,818,998 + AZOBR_RS08685 0.40 +2.0 1,818,999 - AZOBR_RS08685 0.40 +0.8 1,819,065 - AZOBR_RS08685 0.50 -0.9 1,819,065 - AZOBR_RS08685 0.50 +0.7 1,819,065 - AZOBR_RS08685 0.50 +0.7 1,819,065 - AZOBR_RS08685 0.50 +0.7 1,819,065 - AZOBR_RS08685 0.50 +0.6 1,819,170 - AZOBR_RS08685 0.67 +2.0 1,819,170 - AZOBR_RS08685 0.67 +1.1 1,819,182 - AZOBR_RS08685 0.69 +0.6 1,819,182 - AZOBR_RS08685 0.69 +0.5 1,819,184 + AZOBR_RS08685 0.69 -0.4 1,819,185 - AZOBR_RS08685 0.69 -0.0 1,819,277 + AZOBR_RS08685 0.83 +0.2 1,819,277 + AZOBR_RS08685 0.83 +0.9 1,819,429 + AZOBR_RS08690 0.16 +0.9 1,819,570 + AZOBR_RS08690 0.49 -0.1 1,819,571 - AZOBR_RS08690 0.49 -0.1 1,819,573 + AZOBR_RS08690 0.49 +1.5 1,819,573 + AZOBR_RS08690 0.49 -0.2 1,819,573 + AZOBR_RS08690 0.49 -0.9 1,819,574 - AZOBR_RS08690 0.49 +0.4 1,819,765 + -3.2 1,819,765 + -0.2 1,819,766 - -0.4 1,819,875 + +0.4 1,819,875 + -1.2 1,819,876 - -0.7 1,820,127 + AZOBR_RS08695 0.39 +0.2
Or see this region's nucleotide sequence