Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08355

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08350 and AZOBR_RS08355 overlap by 23 nucleotidesAZOBR_RS08355 and AZOBR_RS08360 are separated by 263 nucleotides AZOBR_RS08350: AZOBR_RS08350 - alanine racemase, at 1,754,949 to 1,756,085 _RS08350 AZOBR_RS08355: AZOBR_RS08355 - replicative DNA helicase, at 1,756,063 to 1,757,595 _RS08355 AZOBR_RS08360: AZOBR_RS08360 - cyclopropane-fatty-acyl-phospholipid synthase, at 1,757,859 to 1,759,046 _RS08360 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1755.305 kb on + strandat 1755.306 kb on - strand, within AZOBR_RS08350at 1757.607 kb on - strandat 1757.864 kb on - strandat 1757.962 kb on + strandat 1757.963 kb on - strandat 1757.963 kb on - strandat 1757.995 kb on + strand, within AZOBR_RS08360at 1757.996 kb on - strand, within AZOBR_RS08360at 1758.163 kb on + strand, within AZOBR_RS08360at 1758.163 kb on + strand, within AZOBR_RS08360

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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1,755,305 + -0.2
1,755,306 - AZOBR_RS08350 0.31 -0.4
1,757,607 - -0.3
1,757,864 - +0.2
1,757,962 + -0.1
1,757,963 - -0.2
1,757,963 - +0.7
1,757,995 + AZOBR_RS08360 0.11 -1.0
1,757,996 - AZOBR_RS08360 0.12 -3.9
1,758,163 + AZOBR_RS08360 0.26 -0.4
1,758,163 + AZOBR_RS08360 0.26 +0.6

Or see this region's nucleotide sequence