Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08165

Experiment: Paraquat dichloride 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS08160 and AZOBR_RS08165 are separated by 351 nucleotidesAZOBR_RS08165 and AZOBR_RS08170 are separated by 24 nucleotides AZOBR_RS08160: AZOBR_RS08160 - sugar transporter, at 1,717,815 to 1,720,814 _RS08160 AZOBR_RS08165: AZOBR_RS08165 - hypothetical protein, at 1,721,166 to 1,721,663 _RS08165 AZOBR_RS08170: AZOBR_RS08170 - carbon-nitrogen family hydrolase, at 1,721,688 to 1,722,584 _RS08170 Position (kb) 1721 1722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1720.175 kb on - strand, within AZOBR_RS08160at 1720.175 kb on - strand, within AZOBR_RS08160at 1720.175 kb on - strand, within AZOBR_RS08160at 1720.175 kb on - strand, within AZOBR_RS08160at 1720.175 kb on - strand, within AZOBR_RS08160at 1720.385 kb on - strand, within AZOBR_RS08160at 1720.583 kb on - strandat 1720.682 kb on - strandat 1720.825 kb on - strandat 1720.911 kb on - strandat 1720.974 kb on + strandat 1720.974 kb on + strandat 1720.975 kb on - strandat 1721.887 kb on + strand, within AZOBR_RS08170at 1721.887 kb on + strand, within AZOBR_RS08170at 1721.887 kb on + strand, within AZOBR_RS08170at 1721.887 kb on + strand, within AZOBR_RS08170at 1721.887 kb on + strand, within AZOBR_RS08170at 1721.888 kb on - strand, within AZOBR_RS08170at 1722.047 kb on - strand, within AZOBR_RS08170at 1722.137 kb on - strand, within AZOBR_RS08170at 1722.149 kb on - strand, within AZOBR_RS08170at 1722.149 kb on - strand, within AZOBR_RS08170at 1722.184 kb on + strand, within AZOBR_RS08170at 1722.185 kb on - strand, within AZOBR_RS08170at 1722.229 kb on + strand, within AZOBR_RS08170at 1722.277 kb on + strand, within AZOBR_RS08170at 1722.277 kb on + strand, within AZOBR_RS08170at 1722.277 kb on + strand, within AZOBR_RS08170at 1722.278 kb on - strand, within AZOBR_RS08170at 1722.278 kb on - strand, within AZOBR_RS08170at 1722.280 kb on + strand, within AZOBR_RS08170at 1722.280 kb on + strand, within AZOBR_RS08170at 1722.425 kb on - strand, within AZOBR_RS08170at 1722.425 kb on - strand, within AZOBR_RS08170at 1722.425 kb on - strand, within AZOBR_RS08170at 1722.584 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
remove
1,720,175 - AZOBR_RS08160 0.79 -0.3
1,720,175 - AZOBR_RS08160 0.79 +0.9
1,720,175 - AZOBR_RS08160 0.79 +1.5
1,720,175 - AZOBR_RS08160 0.79 +0.3
1,720,175 - AZOBR_RS08160 0.79 +0.9
1,720,385 - AZOBR_RS08160 0.86 -0.2
1,720,583 - +1.1
1,720,682 - +0.2
1,720,825 - +0.2
1,720,911 - -1.5
1,720,974 + +1.6
1,720,974 + -1.0
1,720,975 - -0.4
1,721,887 + AZOBR_RS08170 0.22 -0.2
1,721,887 + AZOBR_RS08170 0.22 +1.7
1,721,887 + AZOBR_RS08170 0.22 +0.8
1,721,887 + AZOBR_RS08170 0.22 -2.2
1,721,887 + AZOBR_RS08170 0.22 -0.8
1,721,888 - AZOBR_RS08170 0.22 -0.8
1,722,047 - AZOBR_RS08170 0.40 +0.1
1,722,137 - AZOBR_RS08170 0.50 -0.2
1,722,149 - AZOBR_RS08170 0.51 +1.4
1,722,149 - AZOBR_RS08170 0.51 -3.3
1,722,184 + AZOBR_RS08170 0.55 -0.0
1,722,185 - AZOBR_RS08170 0.55 -1.3
1,722,229 + AZOBR_RS08170 0.60 -0.0
1,722,277 + AZOBR_RS08170 0.66 +0.0
1,722,277 + AZOBR_RS08170 0.66 -4.6
1,722,277 + AZOBR_RS08170 0.66 -0.5
1,722,278 - AZOBR_RS08170 0.66 +0.3
1,722,278 - AZOBR_RS08170 0.66 +1.4
1,722,280 + AZOBR_RS08170 0.66 -1.8
1,722,280 + AZOBR_RS08170 0.66 +0.2
1,722,425 - AZOBR_RS08170 0.82 +0.0
1,722,425 - AZOBR_RS08170 0.82 -0.6
1,722,425 - AZOBR_RS08170 0.82 +1.1
1,722,584 + +0.8

Or see this region's nucleotide sequence