Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07245 and AZOBR_RS07250 are separated by 33 nucleotides AZOBR_RS07250 and AZOBR_RS07255 are separated by 28 nucleotides AZOBR_RS07255 and AZOBR_RS07260 are separated by 25 nucleotides AZOBR_RS07260 and AZOBR_RS07265 are separated by 413 nucleotides
AZOBR_RS07245: AZOBR_RS07245 - RNA-metabolising metallo-beta-lactamase, at 1,528,835 to 1,530,499
_RS07245
AZOBR_RS07250: AZOBR_RS07250 - methylmalonyl-CoA epimerase, at 1,530,533 to 1,530,937
_RS07250
AZOBR_RS07255: AZOBR_RS07255 - hypothetical protein, at 1,530,966 to 1,531,214
_RS07255
AZOBR_RS07260: AZOBR_RS07260 - DNA-3-methyladenine glycosylase, at 1,531,240 to 1,531,839
_RS07260
AZOBR_RS07265: AZOBR_RS07265 - hypothetical protein, at 1,532,253 to 1,533,137
_RS07265
Position (kb) 1531
1532 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1530.495 kb on + strand at 1530.776 kb on + strand, within AZOBR_RS07250 at 1530.777 kb on - strand, within AZOBR_RS07250 at 1530.994 kb on - strand, within AZOBR_RS07255 at 1530.994 kb on - strand, within AZOBR_RS07255 at 1530.994 kb on - strand, within AZOBR_RS07255 at 1530.994 kb on - strand, within AZOBR_RS07255 at 1531.700 kb on - strand, within AZOBR_RS07260 at 1531.938 kb on + strand at 1532.082 kb on - strand at 1532.136 kb on + strand at 1532.137 kb on - strand at 1532.137 kb on - strand at 1532.511 kb on + strand, within AZOBR_RS07265 at 1532.512 kb on - strand, within AZOBR_RS07265 at 1532.733 kb on + strand, within AZOBR_RS07265
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 1,530,495 + +2.2 1,530,776 + AZOBR_RS07250 0.60 -3.7 1,530,777 - AZOBR_RS07250 0.60 -0.8 1,530,994 - AZOBR_RS07255 0.11 -3.9 1,530,994 - AZOBR_RS07255 0.11 +0.3 1,530,994 - AZOBR_RS07255 0.11 -3.7 1,530,994 - AZOBR_RS07255 0.11 +0.2 1,531,700 - AZOBR_RS07260 0.77 +0.0 1,531,938 + +0.2 1,532,082 - -2.0 1,532,136 + -0.0 1,532,137 - -0.2 1,532,137 - -0.6 1,532,511 + AZOBR_RS07265 0.29 -1.5 1,532,512 - AZOBR_RS07265 0.29 -0.0 1,532,733 + AZOBR_RS07265 0.54 +0.5
Or see this region's nucleotide sequence