Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05270

Experiment: Paraquat dichloride 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS05265 and AZOBR_RS05270 are separated by 11 nucleotidesAZOBR_RS05270 and AZOBR_RS05275 are separated by 213 nucleotides AZOBR_RS05265: AZOBR_RS05265 - formate dehydrogenase, at 1,118,673 to 1,119,731 _RS05265 AZOBR_RS05270: AZOBR_RS05270 - exported protein of unknown function, at 1,119,743 to 1,120,132 _RS05270 AZOBR_RS05275: AZOBR_RS05275 - hypothetical protein, at 1,120,346 to 1,121,203 _RS05275 Position (kb) 1119 1120 1121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1118.877 kb on + strand, within AZOBR_RS05265at 1118.877 kb on + strand, within AZOBR_RS05265at 1118.877 kb on + strand, within AZOBR_RS05265at 1118.877 kb on + strand, within AZOBR_RS05265at 1118.877 kb on + strand, within AZOBR_RS05265at 1118.877 kb on + strand, within AZOBR_RS05265at 1118.878 kb on - strand, within AZOBR_RS05265at 1118.878 kb on - strand, within AZOBR_RS05265at 1118.967 kb on + strand, within AZOBR_RS05265at 1118.967 kb on + strand, within AZOBR_RS05265at 1118.968 kb on - strand, within AZOBR_RS05265at 1118.968 kb on - strand, within AZOBR_RS05265at 1119.237 kb on + strand, within AZOBR_RS05265at 1119.237 kb on + strand, within AZOBR_RS05265at 1119.238 kb on - strand, within AZOBR_RS05265at 1119.561 kb on + strand, within AZOBR_RS05265at 1119.561 kb on + strand, within AZOBR_RS05265at 1119.562 kb on - strand, within AZOBR_RS05265at 1119.562 kb on - strand, within AZOBR_RS05265at 1119.873 kb on - strand, within AZOBR_RS05270at 1119.873 kb on - strand, within AZOBR_RS05270at 1119.929 kb on + strand, within AZOBR_RS05270at 1120.074 kb on - strand, within AZOBR_RS05270at 1120.147 kb on - strandat 1120.173 kb on - strandat 1120.424 kb on + strandat 1120.760 kb on + strand, within AZOBR_RS05275at 1120.797 kb on - strand, within AZOBR_RS05275at 1120.988 kb on - strand, within AZOBR_RS05275at 1120.988 kb on - strand, within AZOBR_RS05275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
remove
1,118,877 + AZOBR_RS05265 0.19 +0.4
1,118,877 + AZOBR_RS05265 0.19 -1.1
1,118,877 + AZOBR_RS05265 0.19 -3.1
1,118,877 + AZOBR_RS05265 0.19 +1.0
1,118,877 + AZOBR_RS05265 0.19 -1.7
1,118,877 + AZOBR_RS05265 0.19 +1.0
1,118,878 - AZOBR_RS05265 0.19 +0.7
1,118,878 - AZOBR_RS05265 0.19 +1.7
1,118,967 + AZOBR_RS05265 0.28 +1.8
1,118,967 + AZOBR_RS05265 0.28 +1.0
1,118,968 - AZOBR_RS05265 0.28 +1.8
1,118,968 - AZOBR_RS05265 0.28 +2.2
1,119,237 + AZOBR_RS05265 0.53 -1.5
1,119,237 + AZOBR_RS05265 0.53 +0.7
1,119,238 - AZOBR_RS05265 0.53 +1.5
1,119,561 + AZOBR_RS05265 0.84 -1.0
1,119,561 + AZOBR_RS05265 0.84 +0.4
1,119,562 - AZOBR_RS05265 0.84 +0.7
1,119,562 - AZOBR_RS05265 0.84 +0.5
1,119,873 - AZOBR_RS05270 0.33 +0.2
1,119,873 - AZOBR_RS05270 0.33 +0.1
1,119,929 + AZOBR_RS05270 0.48 +1.6
1,120,074 - AZOBR_RS05270 0.85 -0.2
1,120,147 - -0.7
1,120,173 - +0.2
1,120,424 + -0.6
1,120,760 + AZOBR_RS05275 0.48 -0.4
1,120,797 - AZOBR_RS05275 0.53 -1.4
1,120,988 - AZOBR_RS05275 0.75 +0.1
1,120,988 - AZOBR_RS05275 0.75 -3.0

Or see this region's nucleotide sequence