Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05045 and AZOBR_RS05050 are separated by 121 nucleotides AZOBR_RS05050 and AZOBR_RS05055 are separated by 119 nucleotides AZOBR_RS05055 and AZOBR_RS05060 are separated by 1 nucleotides
AZOBR_RS05045: AZOBR_RS05045 - glucose-6-phosphate isomerase, at 1,069,429 to 1,071,072
_RS05045
AZOBR_RS05050: AZOBR_RS05050 - hypothetical protein, at 1,071,194 to 1,071,415
_RS05050
AZOBR_RS05055: AZOBR_RS05055 - zinc protease, at 1,071,535 to 1,072,899
_RS05055
AZOBR_RS05060: AZOBR_RS05060 - zinc protease, at 1,072,901 to 1,074,223
_RS05060
Position (kb) 1071
1072
1073 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1070.658 kb on - strand, within AZOBR_RS05045 at 1071.107 kb on + strand at 1071.107 kb on + strand at 1071.169 kb on + strand at 1071.170 kb on - strand at 1071.170 kb on - strand at 1071.183 kb on + strand at 1071.184 kb on - strand at 1071.408 kb on + strand at 1071.409 kb on - strand at 1071.424 kb on - strand at 1071.782 kb on + strand, within AZOBR_RS05055 at 1071.782 kb on + strand, within AZOBR_RS05055 at 1071.783 kb on - strand, within AZOBR_RS05055 at 1071.783 kb on - strand, within AZOBR_RS05055 at 1071.935 kb on + strand, within AZOBR_RS05055 at 1071.935 kb on + strand, within AZOBR_RS05055 at 1071.936 kb on - strand, within AZOBR_RS05055 at 1071.936 kb on - strand, within AZOBR_RS05055 at 1071.941 kb on + strand, within AZOBR_RS05055 at 1071.942 kb on - strand, within AZOBR_RS05055 at 1071.951 kb on - strand, within AZOBR_RS05055 at 1072.019 kb on + strand, within AZOBR_RS05055 at 1072.019 kb on + strand, within AZOBR_RS05055 at 1072.019 kb on + strand, within AZOBR_RS05055 at 1072.020 kb on - strand, within AZOBR_RS05055 at 1072.349 kb on + strand, within AZOBR_RS05055 at 1072.376 kb on + strand, within AZOBR_RS05055 at 1072.397 kb on + strand, within AZOBR_RS05055 at 1072.397 kb on + strand, within AZOBR_RS05055 at 1072.398 kb on - strand, within AZOBR_RS05055 at 1072.574 kb on + strand, within AZOBR_RS05055 at 1072.628 kb on + strand, within AZOBR_RS05055 at 1073.103 kb on + strand, within AZOBR_RS05060 at 1073.332 kb on - strand, within AZOBR_RS05060 at 1073.373 kb on - strand, within AZOBR_RS05060 at 1073.392 kb on - strand, within AZOBR_RS05060 at 1073.413 kb on - strand, within AZOBR_RS05060 at 1073.551 kb on - strand, within AZOBR_RS05060 at 1073.553 kb on + strand, within AZOBR_RS05060 at 1073.553 kb on + strand, within AZOBR_RS05060 at 1073.553 kb on + strand, within AZOBR_RS05060 at 1073.628 kb on + strand, within AZOBR_RS05060 at 1073.628 kb on + strand, within AZOBR_RS05060 at 1073.629 kb on - strand, within AZOBR_RS05060 at 1073.640 kb on + strand, within AZOBR_RS05060 at 1073.641 kb on - strand, within AZOBR_RS05060 at 1073.724 kb on + strand, within AZOBR_RS05060 at 1073.724 kb on + strand, within AZOBR_RS05060 at 1073.725 kb on - strand, within AZOBR_RS05060 at 1073.725 kb on - strand, within AZOBR_RS05060
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 1,070,658 - AZOBR_RS05045 0.75 -1.5 1,071,107 + -0.4 1,071,107 + -0.0 1,071,169 + -0.6 1,071,170 - +0.0 1,071,170 - +0.4 1,071,183 + +0.1 1,071,184 - +0.5 1,071,408 + -3.5 1,071,409 - -0.9 1,071,424 - +0.3 1,071,782 + AZOBR_RS05055 0.18 +0.2 1,071,782 + AZOBR_RS05055 0.18 -0.7 1,071,783 - AZOBR_RS05055 0.18 -1.3 1,071,783 - AZOBR_RS05055 0.18 +0.3 1,071,935 + AZOBR_RS05055 0.29 -2.0 1,071,935 + AZOBR_RS05055 0.29 -1.6 1,071,936 - AZOBR_RS05055 0.29 -0.9 1,071,936 - AZOBR_RS05055 0.29 +0.5 1,071,941 + AZOBR_RS05055 0.30 +0.7 1,071,942 - AZOBR_RS05055 0.30 +0.6 1,071,951 - AZOBR_RS05055 0.30 -1.0 1,072,019 + AZOBR_RS05055 0.35 +0.3 1,072,019 + AZOBR_RS05055 0.35 -0.5 1,072,019 + AZOBR_RS05055 0.35 -2.4 1,072,020 - AZOBR_RS05055 0.36 -0.0 1,072,349 + AZOBR_RS05055 0.60 -0.5 1,072,376 + AZOBR_RS05055 0.62 -2.6 1,072,397 + AZOBR_RS05055 0.63 +0.1 1,072,397 + AZOBR_RS05055 0.63 -0.5 1,072,398 - AZOBR_RS05055 0.63 -3.0 1,072,574 + AZOBR_RS05055 0.76 +0.6 1,072,628 + AZOBR_RS05055 0.80 -3.4 1,073,103 + AZOBR_RS05060 0.15 -0.3 1,073,332 - AZOBR_RS05060 0.33 -0.4 1,073,373 - AZOBR_RS05060 0.36 +0.7 1,073,392 - AZOBR_RS05060 0.37 -1.1 1,073,413 - AZOBR_RS05060 0.39 -2.1 1,073,551 - AZOBR_RS05060 0.49 -0.6 1,073,553 + AZOBR_RS05060 0.49 -1.4 1,073,553 + AZOBR_RS05060 0.49 -0.0 1,073,553 + AZOBR_RS05060 0.49 -1.9 1,073,628 + AZOBR_RS05060 0.55 -2.8 1,073,628 + AZOBR_RS05060 0.55 -0.2 1,073,629 - AZOBR_RS05060 0.55 -1.1 1,073,640 + AZOBR_RS05060 0.56 -1.6 1,073,641 - AZOBR_RS05060 0.56 -0.2 1,073,724 + AZOBR_RS05060 0.62 -0.5 1,073,724 + AZOBR_RS05060 0.62 -2.8 1,073,725 - AZOBR_RS05060 0.62 +0.9 1,073,725 - AZOBR_RS05060 0.62 -1.0
Or see this region's nucleotide sequence