Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03315

Experiment: Paraquat dichloride 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03305 and AZOBR_RS03310 are separated by 455 nucleotidesAZOBR_RS03310 and AZOBR_RS03315 are separated by 5 nucleotidesAZOBR_RS03315 and AZOBR_RS03320 are separated by 230 nucleotides AZOBR_RS03305: AZOBR_RS03305 - insertase, at 698,645 to 700,384 _RS03305 AZOBR_RS03310: AZOBR_RS03310 - ribonuclease P, at 700,840 to 701,211 _RS03310 AZOBR_RS03315: AZOBR_RS03315 - 50S ribosomal protein L34, at 701,217 to 701,351 _RS03315 AZOBR_RS03320: AZOBR_RS03320 - hypothetical protein, at 701,582 to 703,084 _RS03320 Position (kb) 701 702Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 700.414 kb on - strandat 700.607 kb on - strandat 701.904 kb on - strand, within AZOBR_RS03320at 702.021 kb on - strand, within AZOBR_RS03320at 702.170 kb on + strand, within AZOBR_RS03320at 702.279 kb on - strand, within AZOBR_RS03320

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml
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700,414 - -2.5
700,607 - -1.5
701,904 - AZOBR_RS03320 0.21 +0.9
702,021 - AZOBR_RS03320 0.29 +0.1
702,170 + AZOBR_RS03320 0.39 -3.9
702,279 - AZOBR_RS03320 0.46 +0.3

Or see this region's nucleotide sequence