Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02105 and AZOBR_RS02110 are separated by 22 nucleotides AZOBR_RS02110 and AZOBR_RS02115 are separated by 267 nucleotides AZOBR_RS02115 and AZOBR_RS02120 are separated by 58 nucleotides
AZOBR_RS02105: AZOBR_RS02105 - hypothetical protein, at 432,122 to 432,700
_RS02105
AZOBR_RS02110: AZOBR_RS02110 - protein-PII uridylyltransferase, at 432,723 to 435,524
_RS02110
AZOBR_RS02115: AZOBR_RS02115 - hypothetical protein, at 435,792 to 436,103
_RS02115
AZOBR_RS02120: AZOBR_RS02120 - hypothetical protein, at 436,162 to 436,635
_RS02120
Position (kb) 432
433
434
435
436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 431.832 kb on + strand at 431.833 kb on + strand at 431.833 kb on - strand at 431.837 kb on - strand at 431.837 kb on - strand at 431.932 kb on + strand at 432.074 kb on - strand at 432.617 kb on + strand, within AZOBR_RS02105 at 432.702 kb on - strand at 432.702 kb on - strand at 432.820 kb on + strand at 432.820 kb on + strand at 432.820 kb on + strand at 432.821 kb on - strand at 432.821 kb on - strand at 432.821 kb on - strand at 432.821 kb on - strand at 432.821 kb on - strand at 432.910 kb on + strand at 433.408 kb on + strand, within AZOBR_RS02110 at 433.409 kb on - strand, within AZOBR_RS02110 at 433.558 kb on + strand, within AZOBR_RS02110 at 433.558 kb on + strand, within AZOBR_RS02110 at 433.559 kb on - strand, within AZOBR_RS02110 at 433.729 kb on + strand, within AZOBR_RS02110 at 433.888 kb on + strand, within AZOBR_RS02110 at 433.889 kb on - strand, within AZOBR_RS02110 at 434.014 kb on + strand, within AZOBR_RS02110 at 434.014 kb on + strand, within AZOBR_RS02110 at 434.023 kb on + strand, within AZOBR_RS02110 at 434.023 kb on + strand, within AZOBR_RS02110 at 434.023 kb on + strand, within AZOBR_RS02110 at 434.023 kb on + strand, within AZOBR_RS02110 at 434.023 kb on + strand, within AZOBR_RS02110 at 434.023 kb on + strand, within AZOBR_RS02110 at 434.023 kb on + strand at 434.023 kb on + strand, within AZOBR_RS02110 at 434.024 kb on - strand, within AZOBR_RS02110 at 434.024 kb on - strand, within AZOBR_RS02110 at 434.024 kb on - strand, within AZOBR_RS02110 at 434.032 kb on + strand, within AZOBR_RS02110 at 434.221 kb on - strand, within AZOBR_RS02110 at 434.480 kb on - strand at 434.528 kb on - strand, within AZOBR_RS02110 at 434.716 kb on + strand, within AZOBR_RS02110 at 434.716 kb on + strand at 434.716 kb on + strand, within AZOBR_RS02110 at 434.717 kb on - strand at 434.717 kb on - strand, within AZOBR_RS02110 at 435.046 kb on + strand, within AZOBR_RS02110 at 435.046 kb on + strand, within AZOBR_RS02110 at 435.047 kb on - strand, within AZOBR_RS02110 at 435.055 kb on + strand, within AZOBR_RS02110 at 435.055 kb on + strand, within AZOBR_RS02110 at 435.056 kb on - strand at 435.056 kb on - strand, within AZOBR_RS02110 at 435.586 kb on + strand at 435.603 kb on + strand at 435.603 kb on + strand at 435.779 kb on + strand at 435.779 kb on + strand at 435.780 kb on - strand at 436.163 kb on + strand at 436.446 kb on - strand, within AZOBR_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 431,832 + -0.5 431,833 + -1.4 431,833 - -2.2 431,837 - -2.7 431,837 - -2.1 431,932 + +1.1 432,074 - -0.9 432,617 + AZOBR_RS02105 0.85 -3.9 432,702 - +0.8 432,702 - +1.5 432,820 + -0.8 432,820 + -1.7 432,820 + -2.7 432,821 - +0.5 432,821 - -1.9 432,821 - -1.2 432,821 - -1.2 432,821 - -0.6 432,910 + -1.3 433,408 + AZOBR_RS02110 0.24 +0.8 433,409 - AZOBR_RS02110 0.24 +0.1 433,558 + AZOBR_RS02110 0.30 -0.2 433,558 + AZOBR_RS02110 0.30 +0.2 433,559 - AZOBR_RS02110 0.30 -0.9 433,729 + AZOBR_RS02110 0.36 -1.0 433,888 + AZOBR_RS02110 0.42 -0.6 433,889 - AZOBR_RS02110 0.42 -1.3 434,014 + AZOBR_RS02110 0.46 -2.2 434,014 + AZOBR_RS02110 0.46 +0.2 434,023 + AZOBR_RS02110 0.46 -2.5 434,023 + AZOBR_RS02110 0.46 -1.4 434,023 + AZOBR_RS02110 0.46 -1.9 434,023 + AZOBR_RS02110 0.46 -1.7 434,023 + AZOBR_RS02110 0.46 -3.2 434,023 + AZOBR_RS02110 0.46 -0.6 434,023 + -1.1 434,023 + AZOBR_RS02110 0.46 -1.4 434,024 - AZOBR_RS02110 0.46 -0.8 434,024 - AZOBR_RS02110 0.46 -1.3 434,024 - AZOBR_RS02110 0.46 -0.5 434,032 + AZOBR_RS02110 0.47 -2.6 434,221 - AZOBR_RS02110 0.53 +1.1 434,480 - -0.4 434,528 - AZOBR_RS02110 0.64 -2.6 434,716 + AZOBR_RS02110 0.71 -1.4 434,716 + -1.4 434,716 + AZOBR_RS02110 0.71 -2.0 434,717 - -1.4 434,717 - AZOBR_RS02110 0.71 -2.6 435,046 + AZOBR_RS02110 0.83 +4.5 435,046 + AZOBR_RS02110 0.83 -0.6 435,047 - AZOBR_RS02110 0.83 -3.2 435,055 + AZOBR_RS02110 0.83 -0.4 435,055 + AZOBR_RS02110 0.83 -1.4 435,056 - +0.2 435,056 - AZOBR_RS02110 0.83 -1.1 435,586 + +1.1 435,603 + -2.7 435,603 + -0.0 435,779 + -0.5 435,779 + -1.3 435,780 - +0.2 436,163 + -1.5 436,446 - AZOBR_RS02120 0.60 +0.1
Or see this region's nucleotide sequence