Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01990 and AZOBR_RS01995 are separated by 48 nucleotides AZOBR_RS01995 and AZOBR_RS02000 are separated by 25 nucleotides AZOBR_RS02000 and AZOBR_RS02005 are separated by 466 nucleotides AZOBR_RS02005 and AZOBR_RS02010 are separated by 88 nucleotides
AZOBR_RS01990: AZOBR_RS01990 - phosphoglycerate mutase, at 408,723 to 409,307
_RS01990
AZOBR_RS01995: AZOBR_RS01995 - exodeoxyribonuclease III, at 409,356 to 410,150
_RS01995
AZOBR_RS02000: AZOBR_RS02000 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 410,176 to 410,859
_RS02000
AZOBR_RS02005: AZOBR_RS02005 - transcriptional regulator, at 411,326 to 411,751
_RS02005
AZOBR_RS02010: AZOBR_RS02010 - glutamine amidotransferase, at 411,840 to 412,601
_RS02010
Position (kb) 410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 409.525 kb on + strand, within AZOBR_RS01995 at 409.837 kb on + strand at 409.837 kb on + strand, within AZOBR_RS01995 at 409.837 kb on + strand, within AZOBR_RS01995 at 409.838 kb on - strand, within AZOBR_RS01995 at 409.838 kb on - strand, within AZOBR_RS01995 at 409.963 kb on + strand, within AZOBR_RS01995 at 409.963 kb on + strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.997 kb on - strand, within AZOBR_RS01995 at 410.166 kb on - strand at 410.166 kb on - strand at 410.273 kb on + strand, within AZOBR_RS02000 at 410.274 kb on - strand, within AZOBR_RS02000 at 410.274 kb on - strand, within AZOBR_RS02000 at 410.549 kb on + strand, within AZOBR_RS02000 at 410.555 kb on + strand, within AZOBR_RS02000 at 410.555 kb on + strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.657 kb on + strand, within AZOBR_RS02000 at 410.763 kb on - strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.781 kb on - strand, within AZOBR_RS02000 at 410.781 kb on - strand, within AZOBR_RS02000 at 410.852 kb on + strand at 411.100 kb on + strand at 411.100 kb on + strand at 411.101 kb on - strand at 411.216 kb on + strand at 411.216 kb on + strand at 411.227 kb on + strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.233 kb on - strand at 411.233 kb on - strand at 411.359 kb on + strand at 411.599 kb on + strand, within AZOBR_RS02005 at 411.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 409,525 + AZOBR_RS01995 0.21 -2.8 409,837 + +0.2 409,837 + AZOBR_RS01995 0.61 +0.6 409,837 + AZOBR_RS01995 0.61 -1.7 409,838 - AZOBR_RS01995 0.61 -0.3 409,838 - AZOBR_RS01995 0.61 +0.2 409,963 + AZOBR_RS01995 0.76 -0.6 409,963 + AZOBR_RS01995 0.76 -2.1 409,964 - AZOBR_RS01995 0.76 -0.1 409,964 - AZOBR_RS01995 0.76 -2.9 409,964 - AZOBR_RS01995 0.76 -1.1 409,996 + AZOBR_RS01995 0.81 +1.5 409,996 + AZOBR_RS01995 0.81 -0.1 409,996 + AZOBR_RS01995 0.81 -0.5 409,997 - AZOBR_RS01995 0.81 -0.5 410,166 - -0.1 410,166 - +0.2 410,273 + AZOBR_RS02000 0.14 -0.4 410,274 - AZOBR_RS02000 0.14 -0.2 410,274 - AZOBR_RS02000 0.14 -0.2 410,549 + AZOBR_RS02000 0.55 -2.7 410,555 + AZOBR_RS02000 0.55 +0.1 410,555 + AZOBR_RS02000 0.55 -0.1 410,556 - AZOBR_RS02000 0.56 +1.1 410,556 - AZOBR_RS02000 0.56 -0.7 410,556 - AZOBR_RS02000 0.56 +0.1 410,556 - AZOBR_RS02000 0.56 +0.8 410,657 + AZOBR_RS02000 0.70 -0.7 410,763 - AZOBR_RS02000 0.86 -0.7 410,780 + AZOBR_RS02000 0.88 -1.8 410,780 + AZOBR_RS02000 0.88 -0.1 410,780 + AZOBR_RS02000 0.88 +0.1 410,780 + AZOBR_RS02000 0.88 -0.2 410,781 - AZOBR_RS02000 0.88 -0.8 410,781 - AZOBR_RS02000 0.88 -0.2 410,852 + -2.7 411,100 + +1.3 411,100 + +0.3 411,101 - +0.2 411,216 + -0.3 411,216 + -1.9 411,227 + -2.2 411,228 - -1.9 411,228 - -0.9 411,228 - -0.4 411,232 + +0.1 411,232 + -1.9 411,232 + +1.0 411,233 - -2.0 411,233 - -2.4 411,359 + -2.9 411,599 + AZOBR_RS02005 0.64 -1.1 411,815 + +0.0
Or see this region's nucleotide sequence