Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01985 and AZOBR_RS01990 overlap by 4 nucleotides AZOBR_RS01990 and AZOBR_RS01995 are separated by 48 nucleotides AZOBR_RS01995 and AZOBR_RS02000 are separated by 25 nucleotides
AZOBR_RS01985: AZOBR_RS01985 - glycosyl transferase group 1, at 407,455 to 408,726
_RS01985
AZOBR_RS01990: AZOBR_RS01990 - phosphoglycerate mutase, at 408,723 to 409,307
_RS01990
AZOBR_RS01995: AZOBR_RS01995 - exodeoxyribonuclease III, at 409,356 to 410,150
_RS01995
AZOBR_RS02000: AZOBR_RS02000 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 410,176 to 410,859
_RS02000
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 407.773 kb on + strand, within AZOBR_RS01985 at 407.773 kb on + strand, within AZOBR_RS01985 at 407.773 kb on + strand, within AZOBR_RS01985 at 407.774 kb on - strand, within AZOBR_RS01985 at 407.774 kb on - strand, within AZOBR_RS01985 at 407.774 kb on - strand, within AZOBR_RS01985 at 407.774 kb on - strand, within AZOBR_RS01985 at 407.774 kb on - strand, within AZOBR_RS01985 at 407.774 kb on - strand, within AZOBR_RS01985 at 408.098 kb on - strand, within AZOBR_RS01985 at 408.395 kb on - strand, within AZOBR_RS01985 at 408.439 kb on + strand, within AZOBR_RS01985 at 408.440 kb on - strand, within AZOBR_RS01985 at 408.440 kb on - strand, within AZOBR_RS01985 at 408.864 kb on + strand, within AZOBR_RS01990 at 409.170 kb on + strand, within AZOBR_RS01990 at 409.525 kb on + strand, within AZOBR_RS01995 at 409.837 kb on + strand at 409.837 kb on + strand, within AZOBR_RS01995 at 409.837 kb on + strand, within AZOBR_RS01995 at 409.838 kb on - strand, within AZOBR_RS01995 at 409.838 kb on - strand, within AZOBR_RS01995 at 409.963 kb on + strand, within AZOBR_RS01995 at 409.963 kb on + strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.997 kb on - strand, within AZOBR_RS01995 at 410.166 kb on - strand at 410.166 kb on - strand at 410.273 kb on + strand, within AZOBR_RS02000 at 410.274 kb on - strand, within AZOBR_RS02000 at 410.274 kb on - strand, within AZOBR_RS02000
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 407,773 + AZOBR_RS01985 0.25 +0.0 407,773 + AZOBR_RS01985 0.25 -0.1 407,773 + AZOBR_RS01985 0.25 -0.3 407,774 - AZOBR_RS01985 0.25 -2.8 407,774 - AZOBR_RS01985 0.25 +1.2 407,774 - AZOBR_RS01985 0.25 +1.1 407,774 - AZOBR_RS01985 0.25 -0.1 407,774 - AZOBR_RS01985 0.25 -0.1 407,774 - AZOBR_RS01985 0.25 -0.7 408,098 - AZOBR_RS01985 0.51 -1.0 408,395 - AZOBR_RS01985 0.74 -0.5 408,439 + AZOBR_RS01985 0.77 +0.9 408,440 - AZOBR_RS01985 0.77 -0.7 408,440 - AZOBR_RS01985 0.77 -0.4 408,864 + AZOBR_RS01990 0.24 -1.8 409,170 + AZOBR_RS01990 0.76 -2.1 409,525 + AZOBR_RS01995 0.21 -2.8 409,837 + +0.2 409,837 + AZOBR_RS01995 0.61 +0.6 409,837 + AZOBR_RS01995 0.61 -1.7 409,838 - AZOBR_RS01995 0.61 -0.3 409,838 - AZOBR_RS01995 0.61 +0.2 409,963 + AZOBR_RS01995 0.76 -0.6 409,963 + AZOBR_RS01995 0.76 -2.1 409,964 - AZOBR_RS01995 0.76 -0.1 409,964 - AZOBR_RS01995 0.76 -2.9 409,964 - AZOBR_RS01995 0.76 -1.1 409,996 + AZOBR_RS01995 0.81 +1.5 409,996 + AZOBR_RS01995 0.81 -0.1 409,996 + AZOBR_RS01995 0.81 -0.5 409,997 - AZOBR_RS01995 0.81 -0.5 410,166 - -0.1 410,166 - +0.2 410,273 + AZOBR_RS02000 0.14 -0.4 410,274 - AZOBR_RS02000 0.14 -0.2 410,274 - AZOBR_RS02000 0.14 -0.2
Or see this region's nucleotide sequence