Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01085 and AZOBR_RS01090 are separated by 106 nucleotides AZOBR_RS01090 and AZOBR_RS01095 are separated by 23 nucleotides AZOBR_RS01095 and AZOBR_RS01100 are separated by 5 nucleotides AZOBR_RS01100 and AZOBR_RS01105 are separated by 137 nucleotides
AZOBR_RS01085: AZOBR_RS01085 - hypothetical protein, at 221,047 to 221,820
_RS01085
AZOBR_RS01090: AZOBR_RS01090 - thiamine biosynthesis protein ThiF, at 221,927 to 222,715
_RS01090
AZOBR_RS01095: AZOBR_RS01095 - hypothetical protein, at 222,739 to 223,176
_RS01095
AZOBR_RS01100: AZOBR_RS01100 - hypothetical protein, at 223,182 to 223,454
_RS01100
AZOBR_RS01105: AZOBR_RS01105 - PhoB family transcriptional regulator, at 223,592 to 224,296
_RS01105
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 221.141 kb on - strand, within AZOBR_RS01085 at 221.299 kb on + strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.300 kb on - strand, within AZOBR_RS01085 at 221.301 kb on + strand, within AZOBR_RS01085 at 221.302 kb on - strand, within AZOBR_RS01085 at 221.302 kb on - strand, within AZOBR_RS01085 at 221.348 kb on - strand, within AZOBR_RS01085 at 221.680 kb on + strand, within AZOBR_RS01085 at 221.833 kb on + strand at 221.914 kb on + strand at 222.068 kb on + strand, within AZOBR_RS01090 at 222.351 kb on - strand, within AZOBR_RS01090 at 222.351 kb on - strand, within AZOBR_RS01090 at 223.452 kb on + strand at 223.453 kb on - strand at 223.453 kb on - strand at 223.453 kb on - strand at 223.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 221,141 - AZOBR_RS01085 0.12 -0.1 221,299 + AZOBR_RS01085 0.33 -0.5 221,300 - AZOBR_RS01085 0.33 +0.9 221,300 - AZOBR_RS01085 0.33 +2.1 221,300 - AZOBR_RS01085 0.33 -1.5 221,301 + AZOBR_RS01085 0.33 -1.6 221,302 - AZOBR_RS01085 0.33 +0.5 221,302 - AZOBR_RS01085 0.33 -2.2 221,348 - AZOBR_RS01085 0.39 +0.5 221,680 + AZOBR_RS01085 0.82 -0.4 221,833 + +0.1 221,914 + +0.1 222,068 + AZOBR_RS01090 0.18 +0.8 222,351 - AZOBR_RS01090 0.54 +1.5 222,351 - AZOBR_RS01090 0.54 +4.2 223,452 + -0.5 223,453 - +0.5 223,453 - -1.2 223,453 - +0.4 223,557 - -1.4
Or see this region's nucleotide sequence