Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00650 and AZOBR_RS00655 overlap by 8 nucleotides AZOBR_RS00655 and AZOBR_RS00660 overlap by 1 nucleotides AZOBR_RS00660 and AZOBR_RS00665 are separated by 206 nucleotides AZOBR_RS00665 and AZOBR_RS00670 are separated by 140 nucleotides
AZOBR_RS00650: AZOBR_RS00650 - 5 10-methylene-tetrahydrofolate dehydrogenase, at 130,573 to 131,481
_RS00650
AZOBR_RS00655: AZOBR_RS00655 - hypothetical protein, at 131,474 to 131,833
_RS00655
AZOBR_RS00660: AZOBR_RS00660 - hypothetical protein, at 131,833 to 132,117
_RS00660
AZOBR_RS00665: AZOBR_RS00665 - tRNA-Ala, at 132,324 to 132,399
_RS00665
AZOBR_RS00670: AZOBR_RS00670 - membrane protein, at 132,540 to 133,586
_RS00670
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.849 kb on + strand at 132.075 kb on - strand, within AZOBR_RS00660 at 132.366 kb on + strand, within AZOBR_RS00665 at 132.367 kb on - strand, within AZOBR_RS00665 at 132.367 kb on - strand, within AZOBR_RS00665 at 132.847 kb on + strand, within AZOBR_RS00670 at 132.848 kb on - strand, within AZOBR_RS00670 at 132.848 kb on - strand, within AZOBR_RS00670 at 132.913 kb on + strand, within AZOBR_RS00670 at 132.914 kb on - strand, within AZOBR_RS00670
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 131,849 + +0.2 132,075 - AZOBR_RS00660 0.85 +0.8 132,366 + AZOBR_RS00665 0.55 +1.8 132,367 - AZOBR_RS00665 0.57 -2.5 132,367 - AZOBR_RS00665 0.57 -0.7 132,847 + AZOBR_RS00670 0.29 +1.2 132,848 - AZOBR_RS00670 0.29 -0.6 132,848 - AZOBR_RS00670 0.29 +0.7 132,913 + AZOBR_RS00670 0.36 -1.8 132,914 - AZOBR_RS00670 0.36 -0.1
Or see this region's nucleotide sequence