Experiment: Paraquat dichloride 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00050 and AZOBR_RS00055 are separated by 86 nucleotides AZOBR_RS00055 and AZOBR_RS00060 are separated by 18 nucleotides
AZOBR_RS00050: AZOBR_RS00050 - transposase, at 79 to 471
_RS00050
AZOBR_RS00055: AZOBR_RS00055 - transposase, at 558 to 836
_RS00055
AZOBR_RS00060: AZOBR_RS00060 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein, at 855 to 1,928
_RS00060
Position (kb) 0
1 Strain fitness (log2 ratio) -1
0
1
2 at 0.309 kb on + strand, within AZOBR_RS00050 at 0.309 kb on + strand, within AZOBR_RS00050 at 0.594 kb on + strand, within AZOBR_RS00055 at 0.594 kb on + strand, within AZOBR_RS00055 at 0.595 kb on - strand, within AZOBR_RS00055 at 0.693 kb on + strand, within AZOBR_RS00055 at 0.693 kb on + strand, within AZOBR_RS00055 at 0.694 kb on - strand, within AZOBR_RS00055 at 0.699 kb on + strand, within AZOBR_RS00055 at 0.700 kb on - strand, within AZOBR_RS00055 at 0.769 kb on - strand, within AZOBR_RS00055 at 0.825 kb on + strand at 0.826 kb on - strand at 0.833 kb on - strand at 0.833 kb on - strand at 0.833 kb on - strand at 0.833 kb on - strand at 1.000 kb on + strand, within AZOBR_RS00060 at 1.001 kb on - strand, within AZOBR_RS00060 at 1.001 kb on - strand, within AZOBR_RS00060 at 1.010 kb on + strand, within AZOBR_RS00060 at 1.264 kb on + strand, within AZOBR_RS00060 at 1.265 kb on - strand, within AZOBR_RS00060 at 1.363 kb on + strand, within AZOBR_RS00060 at 1.363 kb on + strand, within AZOBR_RS00060 at 1.364 kb on - strand, within AZOBR_RS00060 at 1.364 kb on - strand, within AZOBR_RS00060
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.02 mg/ml remove 309 + AZOBR_RS00050 0.59 +1.2 309 + AZOBR_RS00050 0.59 +0.4 594 + AZOBR_RS00055 0.13 -0.0 594 + AZOBR_RS00055 0.13 -0.8 595 - AZOBR_RS00055 0.13 +1.2 693 + AZOBR_RS00055 0.48 -0.9 693 + AZOBR_RS00055 0.48 +0.5 694 - AZOBR_RS00055 0.49 +0.4 699 + AZOBR_RS00055 0.51 +1.6 700 - AZOBR_RS00055 0.51 +1.8 769 - AZOBR_RS00055 0.76 +0.5 825 + -0.4 826 - -0.9 833 - +0.0 833 - +0.4 833 - -0.4 833 - +1.6 1,000 + AZOBR_RS00060 0.14 -0.6 1,001 - AZOBR_RS00060 0.14 +0.5 1,001 - AZOBR_RS00060 0.14 -0.9 1,010 + AZOBR_RS00060 0.14 +0.1 1,264 + AZOBR_RS00060 0.38 +0.5 1,265 - AZOBR_RS00060 0.38 -0.1 1,363 + AZOBR_RS00060 0.47 +0.4 1,363 + AZOBR_RS00060 0.47 -0.4 1,364 - AZOBR_RS00060 0.47 -0.5 1,364 - AZOBR_RS00060 0.47 +0.2
Or see this region's nucleotide sequence