Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30225 and AO356_30230 are separated by 16 nucleotides AO356_30230 and AO356_30235 are separated by 189 nucleotides
AO356_30225: AO356_30225 - choline dehydrogenase, at 7,055,146 to 7,056,786
_30225
AO356_30230: AO356_30230 - transmembrane reductase oxidoreductase, at 7,056,803 to 7,057,477
_30230
AO356_30235: AO356_30235 - LysR family transcriptional regulator, at 7,057,667 to 7,058,560
_30235
Position (kb) 7056
7057
7058 Strain fitness (log2 ratio) -2
-1
0
1
2 at 7055.848 kb on + strand, within AO356_30225 at 7055.848 kb on + strand, within AO356_30225 at 7055.849 kb on - strand, within AO356_30225 at 7055.903 kb on + strand, within AO356_30225 at 7055.904 kb on - strand, within AO356_30225 at 7055.904 kb on - strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.059 kb on + strand, within AO356_30225 at 7056.060 kb on - strand, within AO356_30225 at 7056.060 kb on - strand, within AO356_30225 at 7056.064 kb on - strand, within AO356_30225 at 7056.064 kb on - strand, within AO356_30225 at 7056.064 kb on - strand, within AO356_30225 at 7056.094 kb on + strand, within AO356_30225 at 7056.094 kb on + strand, within AO356_30225 at 7056.095 kb on - strand, within AO356_30225 at 7056.122 kb on - strand, within AO356_30225 at 7056.244 kb on + strand, within AO356_30225 at 7056.244 kb on + strand, within AO356_30225 at 7056.244 kb on + strand, within AO356_30225 at 7056.310 kb on + strand, within AO356_30225 at 7056.313 kb on - strand, within AO356_30225 at 7056.321 kb on - strand, within AO356_30225 at 7056.324 kb on + strand, within AO356_30225 at 7056.325 kb on - strand, within AO356_30225 at 7056.325 kb on - strand, within AO356_30225 at 7056.325 kb on - strand, within AO356_30225 at 7056.380 kb on + strand, within AO356_30225 at 7056.422 kb on + strand, within AO356_30225 at 7056.423 kb on - strand, within AO356_30225 at 7056.505 kb on + strand, within AO356_30225 at 7056.505 kb on + strand, within AO356_30225 at 7056.505 kb on + strand, within AO356_30225 at 7056.557 kb on + strand, within AO356_30225 at 7056.557 kb on + strand, within AO356_30225 at 7056.558 kb on - strand, within AO356_30225 at 7056.558 kb on - strand, within AO356_30225 at 7056.626 kb on + strand at 7056.651 kb on + strand at 7056.652 kb on - strand at 7056.690 kb on + strand at 7056.770 kb on + strand at 7056.771 kb on - strand at 7056.777 kb on - strand at 7056.789 kb on - strand at 7056.804 kb on + strand at 7056.889 kb on - strand, within AO356_30230 at 7056.923 kb on + strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.924 kb on - strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.925 kb on + strand, within AO356_30230 at 7056.926 kb on - strand, within AO356_30230 at 7057.004 kb on - strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.043 kb on + strand, within AO356_30230 at 7057.044 kb on - strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.067 kb on + strand, within AO356_30230 at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.552 kb on + strand at 7057.553 kb on - strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.606 kb on + strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.607 kb on - strand at 7057.640 kb on + strand at 7057.654 kb on + strand at 7057.682 kb on + strand at 7057.682 kb on + strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.683 kb on - strand at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.777 kb on + strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.778 kb on - strand, within AO356_30235 at 7057.809 kb on + strand, within AO356_30235 at 7057.809 kb on + strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.810 kb on - strand, within AO356_30235 at 7057.874 kb on - strand, within AO356_30235 at 7057.874 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.035 kb on - strand, within AO356_30235 at 7058.040 kb on + strand, within AO356_30235 at 7058.041 kb on - strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.143 kb on + strand, within AO356_30235 at 7058.144 kb on - strand, within AO356_30235 at 7058.144 kb on - strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.145 kb on + strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.146 kb on - strand, within AO356_30235 at 7058.186 kb on + strand, within AO356_30235 at 7058.187 kb on - strand, within AO356_30235 at 7058.242 kb on + strand, within AO356_30235 at 7058.242 kb on + strand, within AO356_30235 at 7058.243 kb on - strand, within AO356_30235 at 7058.243 kb on - strand, within AO356_30235 at 7058.244 kb on + strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.245 kb on - strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.248 kb on + strand, within AO356_30235 at 7058.249 kb on - strand, within AO356_30235 at 7058.249 kb on - strand, within AO356_30235 at 7058.338 kb on - strand, within AO356_30235 at 7058.338 kb on - strand, within AO356_30235 at 7058.393 kb on + strand, within AO356_30235 at 7058.393 kb on + strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235 at 7058.394 kb on - strand, within AO356_30235
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 7,055,848 + AO356_30225 0.43 -1.7 7,055,848 + AO356_30225 0.43 -2.6 7,055,849 - AO356_30225 0.43 -0.3 7,055,903 + AO356_30225 0.46 +1.5 7,055,904 - AO356_30225 0.46 -0.8 7,055,904 - AO356_30225 0.46 +1.3 7,056,059 + AO356_30225 0.56 +0.1 7,056,059 + AO356_30225 0.56 -0.8 7,056,059 + AO356_30225 0.56 -0.3 7,056,059 + AO356_30225 0.56 +0.3 7,056,060 - AO356_30225 0.56 +0.1 7,056,060 - AO356_30225 0.56 -0.0 7,056,064 - AO356_30225 0.56 +0.1 7,056,064 - AO356_30225 0.56 +0.7 7,056,064 - AO356_30225 0.56 -0.1 7,056,094 + AO356_30225 0.58 +1.4 7,056,094 + AO356_30225 0.58 -1.1 7,056,095 - AO356_30225 0.58 -0.1 7,056,122 - AO356_30225 0.59 -1.2 7,056,244 + AO356_30225 0.67 -0.5 7,056,244 + AO356_30225 0.67 +0.0 7,056,244 + AO356_30225 0.67 -0.5 7,056,310 + AO356_30225 0.71 +0.3 7,056,313 - AO356_30225 0.71 +0.2 7,056,321 - AO356_30225 0.72 -0.9 7,056,324 + AO356_30225 0.72 +0.0 7,056,325 - AO356_30225 0.72 +1.2 7,056,325 - AO356_30225 0.72 -0.6 7,056,325 - AO356_30225 0.72 +0.3 7,056,380 + AO356_30225 0.75 -0.1 7,056,422 + AO356_30225 0.78 -0.0 7,056,423 - AO356_30225 0.78 +0.0 7,056,505 + AO356_30225 0.83 +0.3 7,056,505 + AO356_30225 0.83 -0.3 7,056,505 + AO356_30225 0.83 -0.7 7,056,557 + AO356_30225 0.86 +0.8 7,056,557 + AO356_30225 0.86 -0.0 7,056,558 - AO356_30225 0.86 +1.6 7,056,558 - AO356_30225 0.86 +0.3 7,056,626 + -0.4 7,056,651 + -0.3 7,056,652 - -0.8 7,056,690 + -0.8 7,056,770 + -0.5 7,056,771 - +0.0 7,056,777 - -1.0 7,056,789 - -0.9 7,056,804 + +0.2 7,056,889 - AO356_30230 0.13 +0.7 7,056,923 + AO356_30230 0.18 -2.3 7,056,924 - AO356_30230 0.18 -0.7 7,056,924 - AO356_30230 0.18 +0.4 7,056,924 - AO356_30230 0.18 +0.3 7,056,925 + AO356_30230 0.18 -1.0 7,056,925 + AO356_30230 0.18 +1.3 7,056,925 + AO356_30230 0.18 +0.7 7,056,925 + AO356_30230 0.18 +0.3 7,056,925 + AO356_30230 0.18 +1.4 7,056,926 - AO356_30230 0.18 +0.8 7,057,004 - AO356_30230 0.30 +0.0 7,057,043 + AO356_30230 0.36 +0.2 7,057,043 + AO356_30230 0.36 -0.6 7,057,043 + AO356_30230 0.36 +0.1 7,057,043 + AO356_30230 0.36 +0.3 7,057,043 + AO356_30230 0.36 -0.2 7,057,044 - AO356_30230 0.36 -0.0 7,057,067 + AO356_30230 0.39 -2.0 7,057,067 + AO356_30230 0.39 +0.5 7,057,552 + +0.3 7,057,552 + +0.4 7,057,552 + +0.2 7,057,553 - -0.8 7,057,606 + +0.6 7,057,606 + +1.1 7,057,606 + -0.0 7,057,606 + -0.6 7,057,607 - +0.8 7,057,607 - -0.6 7,057,607 - +0.8 7,057,607 - -0.2 7,057,607 - +0.4 7,057,607 - +1.1 7,057,607 - -0.1 7,057,607 - +1.0 7,057,607 - +0.8 7,057,640 + +1.3 7,057,654 + +0.4 7,057,682 + -0.3 7,057,682 + -0.2 7,057,683 - +0.4 7,057,683 - +1.0 7,057,683 - -1.9 7,057,683 - +0.8 7,057,777 + AO356_30235 0.12 -0.9 7,057,777 + AO356_30235 0.12 -0.4 7,057,777 + AO356_30235 0.12 -1.1 7,057,777 + AO356_30235 0.12 -1.0 7,057,777 + AO356_30235 0.12 +0.0 7,057,777 + AO356_30235 0.12 -1.0 7,057,778 - AO356_30235 0.12 -0.6 7,057,778 - AO356_30235 0.12 +0.5 7,057,778 - AO356_30235 0.12 -0.5 7,057,809 + AO356_30235 0.16 +0.2 7,057,809 + AO356_30235 0.16 +0.2 7,057,810 - AO356_30235 0.16 -0.9 7,057,810 - AO356_30235 0.16 +0.7 7,057,810 - AO356_30235 0.16 +0.3 7,057,874 - AO356_30235 0.23 -0.2 7,057,874 - AO356_30235 0.23 -0.5 7,058,035 - AO356_30235 0.41 +0.2 7,058,035 - AO356_30235 0.41 +0.1 7,058,035 - AO356_30235 0.41 -0.4 7,058,040 + AO356_30235 0.42 +0.0 7,058,041 - AO356_30235 0.42 +0.8 7,058,143 + AO356_30235 0.53 +0.7 7,058,143 + AO356_30235 0.53 +0.5 7,058,143 + AO356_30235 0.53 +0.5 7,058,144 - AO356_30235 0.53 -0.3 7,058,144 - AO356_30235 0.53 -0.3 7,058,145 + AO356_30235 0.53 +0.5 7,058,145 + AO356_30235 0.53 -0.8 7,058,145 + AO356_30235 0.53 -0.5 7,058,146 - AO356_30235 0.54 +0.5 7,058,146 - AO356_30235 0.54 +1.7 7,058,146 - AO356_30235 0.54 -0.2 7,058,186 + AO356_30235 0.58 -1.3 7,058,187 - AO356_30235 0.58 +0.3 7,058,242 + AO356_30235 0.64 +1.0 7,058,242 + AO356_30235 0.64 +1.8 7,058,243 - AO356_30235 0.64 +0.1 7,058,243 - AO356_30235 0.64 +1.0 7,058,244 + AO356_30235 0.65 -0.1 7,058,245 - AO356_30235 0.65 +0.4 7,058,245 - AO356_30235 0.65 -0.0 7,058,245 - AO356_30235 0.65 -1.9 7,058,248 + AO356_30235 0.65 -1.0 7,058,248 + AO356_30235 0.65 +1.0 7,058,248 + AO356_30235 0.65 -0.4 7,058,249 - AO356_30235 0.65 +1.6 7,058,249 - AO356_30235 0.65 -0.6 7,058,338 - AO356_30235 0.75 +0.0 7,058,338 - AO356_30235 0.75 +0.2 7,058,393 + AO356_30235 0.81 -0.2 7,058,393 + AO356_30235 0.81 +0.1 7,058,394 - AO356_30235 0.81 +0.6 7,058,394 - AO356_30235 0.81 -2.0 7,058,394 - AO356_30235 0.81 -0.2
Or see this region's nucleotide sequence