Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29635 and AO356_29640 are separated by 186 nucleotides AO356_29640 and AO356_29645 overlap by 4 nucleotides AO356_29645 and AO356_29650 overlap by 4 nucleotides
AO356_29635: AO356_29635 - transcriptional regulator, at 6,895,140 to 6,895,937
_29635
AO356_29640: AO356_29640 - FAD-dependent oxidoreductase, at 6,896,124 to 6,897,413
_29640
AO356_29645: AO356_29645 - glutamine ABC transporter ATP-binding protein, at 6,897,410 to 6,898,156
_29645
AO356_29650: AO356_29650 - amino acid ABC transporter permease, at 6,898,153 to 6,898,809
_29650
Position (kb)
6896
6897
6898 Strain fitness (log2 ratio)
-2
-1
0
1 at 6895.412 kb on - strand, within AO356_29635 at 6895.454 kb on + strand, within AO356_29635 at 6895.454 kb on + strand, within AO356_29635 at 6895.596 kb on + strand, within AO356_29635 at 6895.596 kb on + strand, within AO356_29635 at 6895.597 kb on - strand, within AO356_29635 at 6895.597 kb on - strand, within AO356_29635 at 6895.749 kb on - strand, within AO356_29635 at 6895.749 kb on - strand, within AO356_29635 at 6895.749 kb on - strand, within AO356_29635 at 6895.909 kb on - strand at 6895.909 kb on - strand at 6895.963 kb on - strand at 6896.066 kb on - strand at 6896.150 kb on - strand at 6896.152 kb on + strand at 6896.152 kb on + strand at 6896.536 kb on + strand, within AO356_29640 at 6896.537 kb on - strand, within AO356_29640 at 6896.701 kb on - strand, within AO356_29640 at 6896.893 kb on + strand, within AO356_29640 at 6896.909 kb on + strand, within AO356_29640 at 6896.996 kb on + strand, within AO356_29640 at 6897.489 kb on - strand, within AO356_29645 at 6897.842 kb on + strand, within AO356_29645 at 6897.847 kb on - strand, within AO356_29645 at 6897.847 kb on - strand, within AO356_29645 at 6898.000 kb on - strand, within AO356_29645 at 6898.000 kb on - strand, within AO356_29645 at 6898.070 kb on + strand, within AO356_29645 at 6898.071 kb on - strand, within AO356_29645 at 6898.071 kb on - strand, within AO356_29645 at 6898.139 kb on - strand at 6898.251 kb on - strand, within AO356_29650 at 6898.251 kb on - strand, within AO356_29650 at 6898.370 kb on + strand, within AO356_29650
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 6,895,412 - AO356_29635 0.34 +0.0 6,895,454 + AO356_29635 0.39 +0.6 6,895,454 + AO356_29635 0.39 -0.2 6,895,596 + AO356_29635 0.57 -0.4 6,895,596 + AO356_29635 0.57 +0.1 6,895,597 - AO356_29635 0.57 -1.4 6,895,597 - AO356_29635 0.57 -0.3 6,895,749 - AO356_29635 0.76 -2.3 6,895,749 - AO356_29635 0.76 +0.6 6,895,749 - AO356_29635 0.76 -0.1 6,895,909 - -0.5 6,895,909 - +1.0 6,895,963 - -0.1 6,896,066 - +1.4 6,896,150 - -0.7 6,896,152 + -0.2 6,896,152 + +0.5 6,896,536 + AO356_29640 0.32 +0.2 6,896,537 - AO356_29640 0.32 -0.9 6,896,701 - AO356_29640 0.45 +1.0 6,896,893 + AO356_29640 0.60 -1.5 6,896,909 + AO356_29640 0.61 +0.8 6,896,996 + AO356_29640 0.68 +0.5 6,897,489 - AO356_29645 0.11 -1.5 6,897,842 + AO356_29645 0.58 +1.7 6,897,847 - AO356_29645 0.59 -0.8 6,897,847 - AO356_29645 0.59 +0.8 6,898,000 - AO356_29645 0.79 +0.1 6,898,000 - AO356_29645 0.79 -0.3 6,898,070 + AO356_29645 0.88 +0.0 6,898,071 - AO356_29645 0.88 +0.7 6,898,071 - AO356_29645 0.88 -1.8 6,898,139 - +1.0 6,898,251 - AO356_29650 0.15 -0.8 6,898,251 - AO356_29650 0.15 +0.7 6,898,370 + AO356_29650 0.33 -0.4
Or see this region's nucleotide sequence