Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29350

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29345 and AO356_29350 are separated by 370 nucleotidesAO356_29350 and AO356_29355 are separated by 171 nucleotidesAO356_29355 and AO356_29360 are separated by 30 nucleotides AO356_29345: AO356_29345 - LysR family transcriptional regulator, at 6,825,034 to 6,825,939 _29345 AO356_29350: AO356_29350 - hypothetical protein, at 6,826,310 to 6,826,585 _29350 AO356_29355: AO356_29355 - hypothetical protein, at 6,826,757 to 6,827,197 _29355 AO356_29360: AO356_29360 - hypothetical protein, at 6,827,228 to 6,830,137 _29360 Position (kb) 6826 6827Strain fitness (log2 ratio) -2 -1 0 1at 6825.370 kb on - strand, within AO356_29345at 6825.412 kb on - strand, within AO356_29345at 6825.641 kb on + strand, within AO356_29345at 6825.952 kb on + strandat 6825.994 kb on + strandat 6826.040 kb on + strandat 6826.040 kb on + strandat 6826.040 kb on + strandat 6826.041 kb on - strandat 6826.041 kb on - strandat 6826.302 kb on + strandat 6826.358 kb on + strand, within AO356_29350at 6826.359 kb on - strand, within AO356_29350at 6826.423 kb on + strand, within AO356_29350at 6826.424 kb on - strand, within AO356_29350at 6826.511 kb on - strand, within AO356_29350at 6826.583 kb on + strandat 6826.584 kb on - strandat 6826.584 kb on - strandat 6826.584 kb on - strandat 6826.589 kb on + strandat 6826.590 kb on - strandat 6826.590 kb on - strandat 6826.712 kb on + strandat 6826.774 kb on + strandat 6826.774 kb on + strandat 6826.774 kb on + strandat 6826.775 kb on - strandat 6826.775 kb on - strandat 6826.775 kb on - strandat 6826.775 kb on - strandat 6826.775 kb on - strandat 6826.775 kb on - strandat 6826.778 kb on + strandat 6826.778 kb on + strandat 6826.779 kb on - strandat 6826.779 kb on - strandat 6826.955 kb on + strand, within AO356_29355at 6827.543 kb on + strand, within AO356_29360at 6827.544 kb on - strand, within AO356_29360

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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6,825,370 - AO356_29345 0.37 -0.1
6,825,412 - AO356_29345 0.42 +0.6
6,825,641 + AO356_29345 0.67 +0.6
6,825,952 + -1.6
6,825,994 + -0.0
6,826,040 + +0.4
6,826,040 + -1.5
6,826,040 + -0.8
6,826,041 - +0.9
6,826,041 - +0.6
6,826,302 + +0.4
6,826,358 + AO356_29350 0.17 -1.4
6,826,359 - AO356_29350 0.18 -0.2
6,826,423 + AO356_29350 0.41 -0.2
6,826,424 - AO356_29350 0.41 -0.5
6,826,511 - AO356_29350 0.73 +0.0
6,826,583 + +0.4
6,826,584 - -0.3
6,826,584 - -2.3
6,826,584 - +0.9
6,826,589 + -0.3
6,826,590 - +0.1
6,826,590 - -0.3
6,826,712 + +0.5
6,826,774 + -0.1
6,826,774 + -0.6
6,826,774 + -1.3
6,826,775 - -0.8
6,826,775 - -0.3
6,826,775 - -0.8
6,826,775 - +0.6
6,826,775 - -0.1
6,826,775 - -2.5
6,826,778 + -0.4
6,826,778 + -0.2
6,826,779 - -0.2
6,826,779 - -0.8
6,826,955 + AO356_29355 0.45 +1.0
6,827,543 + AO356_29360 0.11 +0.3
6,827,544 - AO356_29360 0.11 -2.3

Or see this region's nucleotide sequence