Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29330 and AO356_29335 are separated by 46 nucleotides AO356_29335 and AO356_29340 are separated by 34 nucleotides AO356_29340 and AO356_29345 are separated by 68 nucleotides
AO356_29330: AO356_29330 - ABC transporter substrate-binding protein, at 6,822,318 to 6,823,295
_29330
AO356_29335: AO356_29335 - sugar dehydrogenase, at 6,823,342 to 6,824,103
_29335
AO356_29340: AO356_29340 - multidrug DMT transporter permease, at 6,824,138 to 6,824,965
_29340
AO356_29345: AO356_29345 - LysR family transcriptional regulator, at 6,825,034 to 6,825,939
_29345
Position (kb)
6823
6824
6825 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6822.654 kb on + strand, within AO356_29330 at 6822.654 kb on + strand, within AO356_29330 at 6822.655 kb on - strand, within AO356_29330 at 6822.655 kb on - strand, within AO356_29330 at 6822.655 kb on - strand, within AO356_29330 at 6822.841 kb on - strand, within AO356_29330 at 6822.881 kb on + strand, within AO356_29330 at 6822.978 kb on + strand, within AO356_29330 at 6822.979 kb on - strand, within AO356_29330 at 6822.979 kb on - strand, within AO356_29330 at 6822.979 kb on - strand, within AO356_29330 at 6822.987 kb on + strand, within AO356_29330 at 6822.990 kb on + strand, within AO356_29330 at 6822.991 kb on - strand, within AO356_29330 at 6823.042 kb on + strand, within AO356_29330 at 6823.042 kb on + strand, within AO356_29330 at 6823.044 kb on + strand, within AO356_29330 at 6823.045 kb on - strand, within AO356_29330 at 6823.171 kb on - strand, within AO356_29330 at 6823.186 kb on + strand, within AO356_29330 at 6823.343 kb on + strand at 6823.343 kb on + strand at 6823.344 kb on - strand at 6823.517 kb on + strand, within AO356_29335 at 6823.517 kb on + strand, within AO356_29335 at 6823.517 kb on + strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.629 kb on - strand, within AO356_29335 at 6823.629 kb on - strand, within AO356_29335 at 6823.791 kb on + strand, within AO356_29335 at 6823.991 kb on + strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6824.299 kb on - strand, within AO356_29340 at 6824.299 kb on - strand, within AO356_29340 at 6824.299 kb on - strand, within AO356_29340 at 6824.313 kb on + strand, within AO356_29340 at 6824.313 kb on + strand, within AO356_29340 at 6824.357 kb on - strand, within AO356_29340 at 6824.403 kb on + strand, within AO356_29340 at 6824.403 kb on + strand, within AO356_29340 at 6824.404 kb on - strand, within AO356_29340 at 6824.452 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.536 kb on - strand, within AO356_29340 at 6824.570 kb on - strand, within AO356_29340 at 6824.727 kb on + strand, within AO356_29340 at 6824.728 kb on - strand, within AO356_29340 at 6824.958 kb on - strand at 6824.976 kb on - strand at 6824.976 kb on - strand at 6825.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 6,822,654 + AO356_29330 0.34 -0.7 6,822,654 + AO356_29330 0.34 -0.5 6,822,655 - AO356_29330 0.34 -1.0 6,822,655 - AO356_29330 0.34 +1.4 6,822,655 - AO356_29330 0.34 -0.6 6,822,841 - AO356_29330 0.53 -0.9 6,822,881 + AO356_29330 0.58 -0.9 6,822,978 + AO356_29330 0.67 +0.6 6,822,979 - AO356_29330 0.68 -1.2 6,822,979 - AO356_29330 0.68 -2.2 6,822,979 - AO356_29330 0.68 +0.4 6,822,987 + AO356_29330 0.68 +0.6 6,822,990 + AO356_29330 0.69 +0.3 6,822,991 - AO356_29330 0.69 +0.9 6,823,042 + AO356_29330 0.74 -0.6 6,823,042 + AO356_29330 0.74 +0.0 6,823,044 + AO356_29330 0.74 +2.1 6,823,045 - AO356_29330 0.74 +1.6 6,823,171 - AO356_29330 0.87 +0.4 6,823,186 + AO356_29330 0.89 -2.6 6,823,343 + +1.5 6,823,343 + +0.6 6,823,344 - +1.7 6,823,517 + AO356_29335 0.23 -0.1 6,823,517 + AO356_29335 0.23 -0.4 6,823,517 + AO356_29335 0.23 +0.3 6,823,518 - AO356_29335 0.23 -0.3 6,823,518 - AO356_29335 0.23 +0.5 6,823,518 - AO356_29335 0.23 +0.4 6,823,518 - AO356_29335 0.23 -0.5 6,823,518 - AO356_29335 0.23 +0.2 6,823,518 - AO356_29335 0.23 -0.9 6,823,521 + AO356_29335 0.23 +0.3 6,823,521 + AO356_29335 0.23 -0.2 6,823,521 + AO356_29335 0.23 -0.3 6,823,521 + AO356_29335 0.23 -0.7 6,823,521 + AO356_29335 0.23 +0.4 6,823,521 + AO356_29335 0.23 +1.5 6,823,521 + AO356_29335 0.23 -0.4 6,823,521 + AO356_29335 0.23 -0.3 6,823,521 + AO356_29335 0.23 -0.8 6,823,521 + AO356_29335 0.23 -1.5 6,823,522 - AO356_29335 0.24 -0.2 6,823,522 - AO356_29335 0.24 -0.4 6,823,522 - AO356_29335 0.24 -1.0 6,823,522 - AO356_29335 0.24 -0.3 6,823,522 - AO356_29335 0.24 -0.7 6,823,629 - AO356_29335 0.38 +1.6 6,823,629 - AO356_29335 0.38 +1.0 6,823,791 + AO356_29335 0.59 -1.0 6,823,991 + AO356_29335 0.85 -0.3 6,823,992 - AO356_29335 0.85 -0.7 6,823,992 - AO356_29335 0.85 -0.4 6,823,992 - AO356_29335 0.85 +0.2 6,823,992 - AO356_29335 0.85 -0.8 6,823,992 - AO356_29335 0.85 +1.0 6,824,299 - AO356_29340 0.19 -0.9 6,824,299 - AO356_29340 0.19 +0.6 6,824,299 - AO356_29340 0.19 +0.4 6,824,313 + AO356_29340 0.21 -0.8 6,824,313 + AO356_29340 0.21 +1.0 6,824,357 - AO356_29340 0.26 +0.7 6,824,403 + AO356_29340 0.32 +0.4 6,824,403 + AO356_29340 0.32 -0.5 6,824,404 - AO356_29340 0.32 +0.7 6,824,452 - AO356_29340 0.38 +0.0 6,824,484 - AO356_29340 0.42 -0.2 6,824,484 - AO356_29340 0.42 +0.8 6,824,484 - AO356_29340 0.42 +0.8 6,824,484 - AO356_29340 0.42 -0.1 6,824,536 - AO356_29340 0.48 +0.0 6,824,570 - AO356_29340 0.52 +1.1 6,824,727 + AO356_29340 0.71 -0.3 6,824,728 - AO356_29340 0.71 +1.2 6,824,958 - -0.5 6,824,976 - +0.9 6,824,976 - +0.5 6,825,097 - +2.0
Or see this region's nucleotide sequence