Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28960

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28950 and AO356_28955 are separated by 105 nucleotidesAO356_28955 and AO356_28960 are separated by 268 nucleotidesAO356_28960 and AO356_28965 are separated by 59 nucleotides AO356_28950: AO356_28950 - LysR family transcriptional regulator, at 6,731,036 to 6,731,926 _28950 AO356_28955: AO356_28955 - hypothetical protein, at 6,732,032 to 6,732,301 _28955 AO356_28960: AO356_28960 - FMN reductase, at 6,732,570 to 6,733,133 _28960 AO356_28965: AO356_28965 - monooxygenase, at 6,733,193 to 6,734,380 _28965 Position (kb) 6732 6733 6734Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6731.598 kb on + strand, within AO356_28950at 6731.633 kb on + strand, within AO356_28950at 6731.663 kb on + strand, within AO356_28950at 6731.664 kb on - strand, within AO356_28950at 6731.664 kb on - strand, within AO356_28950at 6731.664 kb on - strand, within AO356_28950at 6731.767 kb on + strand, within AO356_28950at 6731.768 kb on - strand, within AO356_28950at 6731.805 kb on + strand, within AO356_28950at 6731.806 kb on - strand, within AO356_28950at 6731.885 kb on + strandat 6732.034 kb on - strandat 6732.082 kb on + strand, within AO356_28955at 6732.141 kb on + strand, within AO356_28955at 6732.141 kb on + strand, within AO356_28955at 6732.142 kb on - strand, within AO356_28955at 6732.201 kb on + strand, within AO356_28955at 6732.333 kb on - strandat 6732.354 kb on - strandat 6732.354 kb on - strandat 6732.533 kb on - strandat 6732.533 kb on - strandat 6732.533 kb on - strandat 6732.533 kb on - strandat 6732.536 kb on + strandat 6732.566 kb on + strandat 6733.029 kb on + strand, within AO356_28960at 6733.815 kb on + strand, within AO356_28965at 6733.856 kb on - strand, within AO356_28965at 6733.919 kb on - strand, within AO356_28965at 6733.953 kb on - strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.015 kb on + strand, within AO356_28965at 6734.016 kb on - strand, within AO356_28965at 6734.016 kb on - strand, within AO356_28965at 6734.016 kb on - strand, within AO356_28965

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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6,731,598 + AO356_28950 0.63 -1.0
6,731,633 + AO356_28950 0.67 -1.6
6,731,663 + AO356_28950 0.70 +0.9
6,731,664 - AO356_28950 0.70 +3.8
6,731,664 - AO356_28950 0.70 -2.0
6,731,664 - AO356_28950 0.70 +0.5
6,731,767 + AO356_28950 0.82 -0.8
6,731,768 - AO356_28950 0.82 -1.1
6,731,805 + AO356_28950 0.86 +0.5
6,731,806 - AO356_28950 0.86 -1.7
6,731,885 + -1.5
6,732,034 - -0.2
6,732,082 + AO356_28955 0.19 -0.4
6,732,141 + AO356_28955 0.40 -0.7
6,732,141 + AO356_28955 0.40 -0.7
6,732,142 - AO356_28955 0.41 +0.2
6,732,201 + AO356_28955 0.63 +0.9
6,732,333 - +0.2
6,732,354 - -0.3
6,732,354 - +0.7
6,732,533 - +0.3
6,732,533 - +0.4
6,732,533 - +0.3
6,732,533 - +0.9
6,732,536 + -0.3
6,732,566 + +1.6
6,733,029 + AO356_28960 0.81 +2.1
6,733,815 + AO356_28965 0.52 -0.9
6,733,856 - AO356_28965 0.56 +1.4
6,733,919 - AO356_28965 0.61 +1.2
6,733,953 - AO356_28965 0.64 +0.8
6,734,015 + AO356_28965 0.69 +0.7
6,734,015 + AO356_28965 0.69 -1.7
6,734,015 + AO356_28965 0.69 -1.7
6,734,015 + AO356_28965 0.69 -2.5
6,734,015 + AO356_28965 0.69 -0.5
6,734,016 - AO356_28965 0.69 -0.6
6,734,016 - AO356_28965 0.69 -1.7
6,734,016 - AO356_28965 0.69 +1.8

Or see this region's nucleotide sequence