Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27860 and AO356_27865 are separated by 24 nucleotides AO356_27865 and AO356_27870 are separated by 57 nucleotides
AO356_27860: AO356_27860 - hypothetical protein, at 6,359,339 to 6,361,078
_27860
AO356_27865: AO356_27865 - GNAT family acetyltransferase, at 6,361,103 to 6,361,597
_27865
AO356_27870: AO356_27870 - ATPase, at 6,361,655 to 6,362,776
_27870
Position (kb)
6361
6362 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6360.104 kb on + strand, within AO356_27860 at 6360.105 kb on - strand, within AO356_27860 at 6360.191 kb on + strand, within AO356_27860 at 6360.191 kb on + strand, within AO356_27860 at 6360.387 kb on - strand, within AO356_27860 at 6360.387 kb on - strand, within AO356_27860 at 6360.422 kb on + strand, within AO356_27860 at 6360.422 kb on + strand, within AO356_27860 at 6360.422 kb on + strand, within AO356_27860 at 6360.423 kb on - strand, within AO356_27860 at 6360.519 kb on - strand, within AO356_27860 at 6360.519 kb on - strand, within AO356_27860 at 6360.519 kb on - strand, within AO356_27860 at 6360.614 kb on + strand, within AO356_27860 at 6360.615 kb on - strand, within AO356_27860 at 6360.632 kb on + strand, within AO356_27860 at 6360.633 kb on - strand, within AO356_27860 at 6360.702 kb on - strand, within AO356_27860 at 6360.748 kb on + strand, within AO356_27860 at 6360.789 kb on - strand, within AO356_27860 at 6360.941 kb on - strand at 6360.999 kb on - strand at 6361.077 kb on - strand at 6361.077 kb on - strand at 6361.104 kb on + strand at 6361.105 kb on - strand at 6361.129 kb on + strand at 6361.129 kb on + strand at 6361.129 kb on + strand at 6361.129 kb on + strand at 6361.130 kb on - strand at 6361.130 kb on - strand at 6361.130 kb on - strand at 6361.252 kb on + strand, within AO356_27865 at 6361.509 kb on + strand, within AO356_27865 at 6361.557 kb on + strand at 6361.619 kb on - strand at 6361.649 kb on + strand at 6361.731 kb on + strand at 6361.731 kb on + strand at 6361.743 kb on + strand at 6361.743 kb on + strand at 6361.744 kb on - strand at 6361.744 kb on - strand at 6361.744 kb on - strand at 6361.797 kb on + strand, within AO356_27870 at 6361.797 kb on + strand, within AO356_27870 at 6361.797 kb on + strand, within AO356_27870 at 6362.311 kb on - strand, within AO356_27870 at 6362.578 kb on - strand, within AO356_27870
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 6,360,104 + AO356_27860 0.44 +0.1 6,360,105 - AO356_27860 0.44 +0.9 6,360,191 + AO356_27860 0.49 +0.3 6,360,191 + AO356_27860 0.49 -0.6 6,360,387 - AO356_27860 0.60 +0.6 6,360,387 - AO356_27860 0.60 +0.6 6,360,422 + AO356_27860 0.62 +2.1 6,360,422 + AO356_27860 0.62 -1.0 6,360,422 + AO356_27860 0.62 +0.7 6,360,423 - AO356_27860 0.62 -0.6 6,360,519 - AO356_27860 0.68 -0.2 6,360,519 - AO356_27860 0.68 +0.7 6,360,519 - AO356_27860 0.68 -0.0 6,360,614 + AO356_27860 0.73 -0.5 6,360,615 - AO356_27860 0.73 +1.2 6,360,632 + AO356_27860 0.74 +1.0 6,360,633 - AO356_27860 0.74 -1.8 6,360,702 - AO356_27860 0.78 +0.7 6,360,748 + AO356_27860 0.81 +0.3 6,360,789 - AO356_27860 0.83 +1.0 6,360,941 - -0.1 6,360,999 - -0.6 6,361,077 - +0.4 6,361,077 - +0.3 6,361,104 + -0.6 6,361,105 - -0.0 6,361,129 + -0.1 6,361,129 + +1.2 6,361,129 + +0.5 6,361,129 + +1.2 6,361,130 - +0.7 6,361,130 - -2.6 6,361,130 - +0.6 6,361,252 + AO356_27865 0.30 +2.0 6,361,509 + AO356_27865 0.82 -1.5 6,361,557 + +0.0 6,361,619 - -1.0 6,361,649 + -0.2 6,361,731 + -1.3 6,361,731 + +0.8 6,361,743 + +1.5 6,361,743 + -0.3 6,361,744 - -1.1 6,361,744 - +0.8 6,361,744 - -0.6 6,361,797 + AO356_27870 0.13 +0.3 6,361,797 + AO356_27870 0.13 -0.0 6,361,797 + AO356_27870 0.13 +0.4 6,362,311 - AO356_27870 0.58 +0.4 6,362,578 - AO356_27870 0.82 -0.2
Or see this region's nucleotide sequence