Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27555 and AO356_27560 overlap by 4 nucleotides AO356_27560 and AO356_27565 are separated by 219 nucleotides
AO356_27555: AO356_27555 - multidrug transporter, at 6,284,509 to 6,287,589
_27555
AO356_27560: AO356_27560 - hypothetical protein, at 6,287,586 to 6,288,695
_27560
AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378
_27565
Position (kb)
6287
6288
6289 Strain fitness (log2 ratio)
-1
0
1
2 at 6286.791 kb on - strand, within AO356_27555 at 6287.258 kb on + strand, within AO356_27555 at 6287.258 kb on + strand, within AO356_27555 at 6287.439 kb on + strand at 6287.440 kb on - strand at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6288.011 kb on - strand, within AO356_27560 at 6288.570 kb on + strand, within AO356_27560 at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.707 kb on - strand at 6288.707 kb on - strand at 6288.806 kb on + strand at 6288.828 kb on - strand at 6289.306 kb on - strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.323 kb on - strand, within AO356_27565 at 6289.326 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.566 kb on + strand, within AO356_27565
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 6,286,791 - AO356_27555 0.74 -0.2 6,287,258 + AO356_27555 0.89 -0.3 6,287,258 + AO356_27555 0.89 -0.7 6,287,439 + -0.9 6,287,440 - -0.1 6,287,923 + AO356_27560 0.30 -0.6 6,287,923 + AO356_27560 0.30 +0.2 6,287,923 + AO356_27560 0.30 -0.6 6,287,923 + AO356_27560 0.30 +0.1 6,287,924 - AO356_27560 0.30 -1.1 6,287,924 - AO356_27560 0.30 -0.1 6,288,011 - AO356_27560 0.38 -0.5 6,288,570 + AO356_27560 0.89 -0.1 6,288,695 + -0.0 6,288,695 + +0.6 6,288,695 + -0.5 6,288,695 + +0.4 6,288,695 + +0.5 6,288,696 - -1.2 6,288,696 - +1.3 6,288,696 - +0.0 6,288,696 - -0.1 6,288,696 - +0.4 6,288,707 - -1.0 6,288,707 - +0.4 6,288,806 + +0.8 6,288,828 - +1.1 6,289,306 - AO356_27565 0.27 -0.7 6,289,322 + AO356_27565 0.28 +0.4 6,289,322 + AO356_27565 0.28 +1.0 6,289,323 - AO356_27565 0.28 +0.8 6,289,326 + AO356_27565 0.28 -1.5 6,289,473 + AO356_27565 0.38 -0.8 6,289,473 + AO356_27565 0.38 +0.3 6,289,474 - AO356_27565 0.38 +0.7 6,289,474 - AO356_27565 0.38 -0.9 6,289,474 - AO356_27565 0.38 +2.0 6,289,566 + AO356_27565 0.44 +0.6
Or see this region's nucleotide sequence