Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27480 and AO356_27485 are separated by 45 nucleotides AO356_27485 and AO356_27490 are separated by 173 nucleotides
AO356_27480: AO356_27480 - hypothetical protein, at 6,263,235 to 6,264,242
_27480
AO356_27485: AO356_27485 - hypothetical protein, at 6,264,288 to 6,265,094
_27485
AO356_27490: AO356_27490 - xylose isomerase, at 6,265,268 to 6,266,077
_27490
Position (kb)
6264
6265
6266 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.525 kb on + strand, within AO356_27480 at 6263.614 kb on + strand, within AO356_27480 at 6263.615 kb on - strand, within AO356_27480 at 6263.704 kb on - strand, within AO356_27480 at 6263.759 kb on + strand, within AO356_27480 at 6263.759 kb on + strand, within AO356_27480 at 6263.760 kb on - strand, within AO356_27480 at 6263.818 kb on + strand, within AO356_27480 at 6263.819 kb on - strand, within AO356_27480 at 6263.997 kb on + strand, within AO356_27480 at 6263.997 kb on + strand, within AO356_27480 at 6263.998 kb on - strand, within AO356_27480 at 6264.084 kb on + strand, within AO356_27480 at 6264.085 kb on - strand, within AO356_27480 at 6264.088 kb on - strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.192 kb on + strand at 6264.407 kb on - strand, within AO356_27485 at 6264.432 kb on + strand, within AO356_27485 at 6264.432 kb on + strand, within AO356_27485 at 6264.433 kb on - strand, within AO356_27485 at 6264.904 kb on + strand, within AO356_27485 at 6265.102 kb on + strand at 6265.103 kb on - strand at 6265.103 kb on - strand at 6265.168 kb on + strand at 6265.168 kb on + strand at 6265.179 kb on + strand at 6265.179 kb on + strand at 6265.228 kb on - strand at 6265.324 kb on - strand at 6265.415 kb on + strand, within AO356_27490 at 6265.416 kb on - strand, within AO356_27490 at 6265.494 kb on + strand, within AO356_27490 at 6265.495 kb on - strand, within AO356_27490 at 6265.530 kb on + strand, within AO356_27490 at 6265.530 kb on + strand, within AO356_27490 at 6265.531 kb on - strand, within AO356_27490 at 6265.552 kb on - strand, within AO356_27490 at 6265.583 kb on - strand, within AO356_27490 at 6265.586 kb on + strand, within AO356_27490 at 6265.586 kb on + strand, within AO356_27490 at 6265.586 kb on + strand, within AO356_27490 at 6265.586 kb on + strand, within AO356_27490 at 6265.586 kb on + strand, within AO356_27490 at 6265.586 kb on + strand, within AO356_27490 at 6265.586 kb on + strand, within AO356_27490 at 6265.587 kb on - strand, within AO356_27490 at 6265.587 kb on - strand, within AO356_27490 at 6265.587 kb on - strand, within AO356_27490 at 6265.587 kb on - strand, within AO356_27490 at 6265.587 kb on - strand, within AO356_27490 at 6265.587 kb on - strand, within AO356_27490 at 6265.587 kb on - strand, within AO356_27490 at 6265.647 kb on - strand, within AO356_27490 at 6265.653 kb on - strand, within AO356_27490 at 6265.698 kb on + strand, within AO356_27490 at 6265.698 kb on + strand, within AO356_27490 at 6265.698 kb on + strand, within AO356_27490 at 6265.699 kb on - strand, within AO356_27490 at 6265.711 kb on - strand, within AO356_27490 at 6265.905 kb on + strand, within AO356_27490 at 6265.905 kb on + strand, within AO356_27490 at 6266.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 6,263,460 + AO356_27480 0.22 +0.9 6,263,460 + AO356_27480 0.22 -0.5 6,263,460 + AO356_27480 0.22 +0.1 6,263,460 + AO356_27480 0.22 -0.1 6,263,460 + AO356_27480 0.22 -0.3 6,263,460 + AO356_27480 0.22 +0.4 6,263,460 + AO356_27480 0.22 +1.0 6,263,461 - AO356_27480 0.22 -2.3 6,263,461 - AO356_27480 0.22 -1.3 6,263,461 - AO356_27480 0.22 -1.3 6,263,461 - AO356_27480 0.22 -0.1 6,263,525 + AO356_27480 0.29 +1.0 6,263,614 + AO356_27480 0.38 -0.5 6,263,615 - AO356_27480 0.38 -0.4 6,263,704 - AO356_27480 0.47 +0.1 6,263,759 + AO356_27480 0.52 +0.1 6,263,759 + AO356_27480 0.52 -0.0 6,263,760 - AO356_27480 0.52 -0.5 6,263,818 + AO356_27480 0.58 +0.8 6,263,819 - AO356_27480 0.58 +0.2 6,263,997 + AO356_27480 0.76 +1.4 6,263,997 + AO356_27480 0.76 -0.6 6,263,998 - AO356_27480 0.76 +2.1 6,264,084 + AO356_27480 0.84 +0.1 6,264,085 - AO356_27480 0.84 -0.9 6,264,088 - AO356_27480 0.85 -0.5 6,264,135 + AO356_27480 0.89 +0.7 6,264,135 + AO356_27480 0.89 -0.8 6,264,135 + AO356_27480 0.89 +0.3 6,264,135 + AO356_27480 0.89 -2.1 6,264,192 + -0.4 6,264,407 - AO356_27485 0.15 +2.0 6,264,432 + AO356_27485 0.18 +0.3 6,264,432 + AO356_27485 0.18 +1.0 6,264,433 - AO356_27485 0.18 +0.2 6,264,904 + AO356_27485 0.76 -0.7 6,265,102 + -2.2 6,265,103 - +0.9 6,265,103 - -2.0 6,265,168 + +0.1 6,265,168 + -0.1 6,265,179 + +0.6 6,265,179 + +0.9 6,265,228 - +0.3 6,265,324 - +1.5 6,265,415 + AO356_27490 0.18 -1.3 6,265,416 - AO356_27490 0.18 -0.4 6,265,494 + AO356_27490 0.28 +1.3 6,265,495 - AO356_27490 0.28 +0.8 6,265,530 + AO356_27490 0.32 -0.0 6,265,530 + AO356_27490 0.32 -0.1 6,265,531 - AO356_27490 0.32 -2.0 6,265,552 - AO356_27490 0.35 -1.1 6,265,583 - AO356_27490 0.39 -0.3 6,265,586 + AO356_27490 0.39 +0.0 6,265,586 + AO356_27490 0.39 -1.8 6,265,586 + AO356_27490 0.39 +0.0 6,265,586 + AO356_27490 0.39 -1.4 6,265,586 + AO356_27490 0.39 -0.4 6,265,586 + AO356_27490 0.39 -0.5 6,265,586 + AO356_27490 0.39 -0.6 6,265,587 - AO356_27490 0.39 +1.0 6,265,587 - AO356_27490 0.39 +0.4 6,265,587 - AO356_27490 0.39 -0.5 6,265,587 - AO356_27490 0.39 -0.4 6,265,587 - AO356_27490 0.39 -1.9 6,265,587 - AO356_27490 0.39 +0.2 6,265,587 - AO356_27490 0.39 +0.5 6,265,647 - AO356_27490 0.47 -1.1 6,265,653 - AO356_27490 0.48 +0.2 6,265,698 + AO356_27490 0.53 -0.3 6,265,698 + AO356_27490 0.53 +0.2 6,265,698 + AO356_27490 0.53 -0.7 6,265,699 - AO356_27490 0.53 +0.3 6,265,711 - AO356_27490 0.55 -0.6 6,265,905 + AO356_27490 0.79 +0.2 6,265,905 + AO356_27490 0.79 -0.2 6,266,078 - -1.8
Or see this region's nucleotide sequence