Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25170 and AO356_25175 overlap by 1 nucleotides AO356_25175 and AO356_25180 are separated by 165 nucleotides AO356_25180 and AO356_25185 are separated by 219 nucleotides AO356_25185 and AO356_25190 overlap by 4 nucleotides
AO356_25170: AO356_25170 - lipid carrier protein, at 5,695,783 to 5,696,253
_25170
AO356_25175: AO356_25175 - zinc-binding protein, at 5,696,253 to 5,696,627
_25175
AO356_25180: AO356_25180 - DnrE protein, at 5,696,793 to 5,697,470
_25180
AO356_25185: AO356_25185 - hypothetical protein, at 5,697,690 to 5,698,337
_25185
AO356_25190: AO356_25190 - histidine kinase, at 5,698,334 to 5,700,133
_25190
Position (kb) 5696
5697
5698 Strain fitness (log2 ratio) -2
-1
0
1 at 5695.985 kb on - strand, within AO356_25170 at 5695.985 kb on - strand, within AO356_25170 at 5696.101 kb on - strand, within AO356_25170 at 5696.193 kb on - strand, within AO356_25170 at 5696.283 kb on + strand at 5696.283 kb on + strand at 5696.283 kb on + strand at 5696.794 kb on + strand at 5697.444 kb on + strand at 5697.444 kb on + strand at 5697.444 kb on + strand at 5697.475 kb on + strand at 5697.475 kb on + strand at 5697.519 kb on + strand at 5697.836 kb on - strand, within AO356_25185 at 5697.982 kb on + strand, within AO356_25185 at 5697.982 kb on + strand, within AO356_25185 at 5697.983 kb on - strand, within AO356_25185 at 5697.983 kb on - strand, within AO356_25185 at 5698.007 kb on + strand, within AO356_25185 at 5698.021 kb on + strand, within AO356_25185 at 5698.022 kb on - strand, within AO356_25185 at 5698.102 kb on + strand, within AO356_25185 at 5698.102 kb on + strand, within AO356_25185 at 5698.102 kb on + strand, within AO356_25185 at 5698.103 kb on - strand, within AO356_25185 at 5698.103 kb on - strand, within AO356_25185 at 5698.103 kb on - strand, within AO356_25185 at 5698.411 kb on + strand at 5698.412 kb on - strand at 5698.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,695,985 - AO356_25170 0.43 +0.2 5,695,985 - AO356_25170 0.43 -0.2 5,696,101 - AO356_25170 0.68 -0.7 5,696,193 - AO356_25170 0.87 -0.4 5,696,283 + -1.4 5,696,283 + -0.9 5,696,283 + +0.6 5,696,794 + -0.4 5,697,444 + +1.1 5,697,444 + -1.7 5,697,444 + -2.6 5,697,475 + -0.5 5,697,475 + -0.1 5,697,519 + -1.0 5,697,836 - AO356_25185 0.23 -0.4 5,697,982 + AO356_25185 0.45 -0.9 5,697,982 + AO356_25185 0.45 -1.9 5,697,983 - AO356_25185 0.45 -0.2 5,697,983 - AO356_25185 0.45 +1.0 5,698,007 + AO356_25185 0.49 +0.8 5,698,021 + AO356_25185 0.51 +0.1 5,698,022 - AO356_25185 0.51 -1.2 5,698,102 + AO356_25185 0.64 -0.0 5,698,102 + AO356_25185 0.64 +0.6 5,698,102 + AO356_25185 0.64 +1.0 5,698,103 - AO356_25185 0.64 +0.6 5,698,103 - AO356_25185 0.64 +0.8 5,698,103 - AO356_25185 0.64 -0.6 5,698,411 + +1.4 5,698,412 - +0.0 5,698,412 - -0.6
Or see this region's nucleotide sequence