Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24590 and AO356_24595 are separated by 149 nucleotides AO356_24595 and AO356_24600 are separated by 12 nucleotides
AO356_24590: AO356_24590 - MFS transporter, at 5,559,955 to 5,561,277
_24590
AO356_24595: AO356_24595 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) <small>(from data)</small>, at 5,561,427 to 5,562,419
_24595
AO356_24600: AO356_24600 - ketoglutarate semialdehyde dehydrogenase, at 5,562,432 to 5,564,012
_24600
Position (kb) 5561
5562
5563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5560.696 kb on + strand, within AO356_24590 at 5560.696 kb on + strand, within AO356_24590 at 5560.720 kb on + strand, within AO356_24590 at 5560.720 kb on + strand, within AO356_24590 at 5560.721 kb on - strand, within AO356_24590 at 5560.721 kb on - strand, within AO356_24590 at 5560.721 kb on - strand, within AO356_24590 at 5560.804 kb on + strand, within AO356_24590 at 5560.805 kb on - strand, within AO356_24590 at 5560.805 kb on - strand, within AO356_24590 at 5560.805 kb on - strand, within AO356_24590 at 5560.835 kb on + strand, within AO356_24590 at 5560.888 kb on + strand, within AO356_24590 at 5560.888 kb on + strand, within AO356_24590 at 5560.889 kb on - strand, within AO356_24590 at 5561.086 kb on + strand, within AO356_24590 at 5561.086 kb on + strand, within AO356_24590 at 5561.149 kb on + strand at 5561.149 kb on + strand at 5561.201 kb on - strand at 5561.289 kb on + strand at 5561.290 kb on - strand at 5561.290 kb on - strand at 5561.412 kb on + strand at 5561.426 kb on + strand at 5561.426 kb on + strand at 5561.426 kb on + strand at 5561.434 kb on + strand at 5561.435 kb on - strand at 5561.607 kb on + strand, within AO356_24595 at 5561.844 kb on + strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5561.944 kb on - strand, within AO356_24595 at 5562.031 kb on - strand, within AO356_24595 at 5562.125 kb on + strand, within AO356_24595 at 5562.225 kb on + strand, within AO356_24595 at 5562.225 kb on + strand, within AO356_24595 at 5562.225 kb on + strand, within AO356_24595 at 5562.226 kb on - strand, within AO356_24595 at 5562.226 kb on - strand, within AO356_24595 at 5562.417 kb on + strand at 5562.457 kb on - strand at 5562.457 kb on - strand at 5562.606 kb on + strand, within AO356_24600 at 5563.087 kb on - strand, within AO356_24600
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,560,696 + AO356_24590 0.56 -0.6 5,560,696 + AO356_24590 0.56 +0.2 5,560,720 + AO356_24590 0.58 -0.5 5,560,720 + AO356_24590 0.58 +0.2 5,560,721 - AO356_24590 0.58 -0.7 5,560,721 - AO356_24590 0.58 +0.6 5,560,721 - AO356_24590 0.58 -0.7 5,560,804 + AO356_24590 0.64 -0.3 5,560,805 - AO356_24590 0.64 +0.5 5,560,805 - AO356_24590 0.64 +0.1 5,560,805 - AO356_24590 0.64 +1.2 5,560,835 + AO356_24590 0.67 -0.2 5,560,888 + AO356_24590 0.71 -0.8 5,560,888 + AO356_24590 0.71 -2.1 5,560,889 - AO356_24590 0.71 -1.5 5,561,086 + AO356_24590 0.85 -2.3 5,561,086 + AO356_24590 0.85 -0.6 5,561,149 + +0.5 5,561,149 + -0.0 5,561,201 - +0.0 5,561,289 + -0.6 5,561,290 - +0.7 5,561,290 - +0.5 5,561,412 + +0.1 5,561,426 + +0.4 5,561,426 + +1.8 5,561,426 + -0.8 5,561,434 + +1.0 5,561,435 - +1.1 5,561,607 + AO356_24595 0.18 +0.4 5,561,844 + AO356_24595 0.42 +0.7 5,561,944 - AO356_24595 0.52 +1.0 5,561,944 - AO356_24595 0.52 -1.0 5,561,944 - AO356_24595 0.52 +0.2 5,561,944 - AO356_24595 0.52 +1.1 5,562,031 - AO356_24595 0.61 -1.1 5,562,125 + AO356_24595 0.70 +0.0 5,562,225 + AO356_24595 0.80 +0.0 5,562,225 + AO356_24595 0.80 -0.6 5,562,225 + AO356_24595 0.80 +0.4 5,562,226 - AO356_24595 0.80 -1.1 5,562,226 - AO356_24595 0.80 -0.2 5,562,417 + -0.5 5,562,457 - +0.7 5,562,457 - -0.1 5,562,606 + AO356_24600 0.11 -0.9 5,563,087 - AO356_24600 0.41 +0.0
Or see this region's nucleotide sequence