Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24575

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24570 and AO356_24575 are separated by 169 nucleotidesAO356_24575 and AO356_24580 are separated by 248 nucleotides AO356_24570: AO356_24570 - RND transporter, at 5,549,572 to 5,551,947 _24570 AO356_24575: AO356_24575 - hypothetical protein, at 5,552,117 to 5,556,805 _24575 AO356_24580: AO356_24580 - GntR family transcriptional regulator, at 5,557,054 to 5,557,773 _24580 Position (kb) 5552 5553 5554 5555 5556 5557Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5551.246 kb on + strand, within AO356_24570at 5551.247 kb on - strand, within AO356_24570at 5551.459 kb on + strand, within AO356_24570at 5551.459 kb on + strand, within AO356_24570at 5551.459 kb on + strand, within AO356_24570at 5551.459 kb on + strand, within AO356_24570at 5551.460 kb on - strand, within AO356_24570at 5551.460 kb on - strand, within AO356_24570at 5551.640 kb on - strand, within AO356_24570at 5551.648 kb on + strand, within AO356_24570at 5551.648 kb on + strand, within AO356_24570at 5551.648 kb on + strand, within AO356_24570at 5551.648 kb on + strand, within AO356_24570at 5551.648 kb on + strand, within AO356_24570at 5551.648 kb on + strand, within AO356_24570at 5551.648 kb on + strand, within AO356_24570at 5551.649 kb on - strand, within AO356_24570at 5551.649 kb on - strand, within AO356_24570at 5551.654 kb on + strand, within AO356_24570at 5551.654 kb on + strand, within AO356_24570at 5551.654 kb on + strand, within AO356_24570at 5551.654 kb on + strand, within AO356_24570at 5551.654 kb on + strand, within AO356_24570at 5551.654 kb on + strand, within AO356_24570at 5551.654 kb on + strand, within AO356_24570at 5551.655 kb on - strand, within AO356_24570at 5551.655 kb on - strand, within AO356_24570at 5551.655 kb on - strand, within AO356_24570at 5551.655 kb on - strand, within AO356_24570at 5551.657 kb on - strand, within AO356_24570at 5551.705 kb on + strand, within AO356_24570at 5551.705 kb on + strand, within AO356_24570at 5551.708 kb on + strand, within AO356_24570at 5552.226 kb on + strandat 5552.301 kb on + strandat 5552.302 kb on - strandat 5552.316 kb on + strandat 5552.353 kb on - strandat 5552.418 kb on - strandat 5552.418 kb on - strandat 5552.459 kb on - strandat 5552.789 kb on + strand, within AO356_24575at 5552.789 kb on + strand, within AO356_24575at 5552.789 kb on + strand, within AO356_24575at 5552.790 kb on - strand, within AO356_24575at 5552.827 kb on - strand, within AO356_24575at 5553.051 kb on + strand, within AO356_24575at 5553.088 kb on - strand, within AO356_24575at 5553.111 kb on + strand, within AO356_24575at 5553.207 kb on + strand, within AO356_24575at 5553.208 kb on - strand, within AO356_24575at 5553.216 kb on - strand, within AO356_24575at 5553.251 kb on + strand, within AO356_24575at 5553.436 kb on - strand, within AO356_24575at 5553.436 kb on - strand, within AO356_24575at 5553.460 kb on - strand, within AO356_24575at 5553.507 kb on + strand, within AO356_24575at 5553.507 kb on + strand, within AO356_24575at 5553.507 kb on + strand, within AO356_24575at 5553.507 kb on + strand, within AO356_24575at 5553.508 kb on - strand, within AO356_24575at 5553.584 kb on + strand, within AO356_24575at 5553.584 kb on + strand, within AO356_24575at 5553.584 kb on + strand, within AO356_24575at 5553.585 kb on - strand, within AO356_24575at 5553.588 kb on + strand, within AO356_24575at 5553.589 kb on - strand, within AO356_24575at 5553.589 kb on - strand, within AO356_24575at 5553.657 kb on + strand, within AO356_24575at 5553.657 kb on + strand, within AO356_24575at 5553.657 kb on + strand, within AO356_24575at 5553.658 kb on - strand, within AO356_24575at 5553.658 kb on - strand, within AO356_24575at 5553.658 kb on - strand, within AO356_24575at 5553.658 kb on - strand, within AO356_24575at 5553.661 kb on + strand, within AO356_24575at 5553.661 kb on + strand, within AO356_24575at 5553.662 kb on - strand, within AO356_24575at 5553.662 kb on - strand, within AO356_24575at 5553.662 kb on - strand, within AO356_24575at 5553.662 kb on - strand, within AO356_24575at 5553.667 kb on + strand, within AO356_24575at 5553.667 kb on + strand, within AO356_24575at 5553.668 kb on - strand, within AO356_24575at 5553.720 kb on + strand, within AO356_24575at 5553.756 kb on - strand, within AO356_24575at 5553.790 kb on - strand, within AO356_24575at 5554.084 kb on - strand, within AO356_24575at 5554.084 kb on - strand, within AO356_24575at 5554.129 kb on - strand, within AO356_24575at 5554.140 kb on + strand, within AO356_24575at 5554.264 kb on + strand, within AO356_24575at 5554.713 kb on + strand, within AO356_24575at 5554.713 kb on + strand, within AO356_24575at 5554.714 kb on - strand, within AO356_24575at 5554.719 kb on + strand, within AO356_24575at 5554.769 kb on - strand, within AO356_24575at 5555.002 kb on - strand, within AO356_24575at 5555.557 kb on - strand, within AO356_24575at 5555.848 kb on - strand, within AO356_24575at 5555.891 kb on + strand, within AO356_24575at 5555.961 kb on - strand, within AO356_24575at 5555.997 kb on + strand, within AO356_24575at 5556.140 kb on + strand, within AO356_24575at 5556.141 kb on - strand, within AO356_24575at 5556.183 kb on + strand, within AO356_24575at 5556.189 kb on + strand, within AO356_24575at 5556.189 kb on + strand, within AO356_24575at 5556.189 kb on + strand, within AO356_24575at 5556.678 kb on + strandat 5556.679 kb on - strandat 5556.679 kb on - strandat 5556.691 kb on + strandat 5556.691 kb on + strandat 5556.692 kb on - strandat 5556.692 kb on - strandat 5556.884 kb on - strandat 5556.887 kb on + strandat 5556.887 kb on + strandat 5556.887 kb on + strandat 5556.887 kb on + strandat 5556.887 kb on + strandat 5556.887 kb on + strandat 5556.887 kb on + strandat 5556.888 kb on - strandat 5556.888 kb on - strandat 5556.888 kb on - strandat 5556.888 kb on - strandat 5556.888 kb on - strandat 5556.888 kb on - strandat 5556.891 kb on + strandat 5556.907 kb on + strandat 5556.939 kb on + strandat 5556.999 kb on + strandat 5557.052 kb on + strandat 5557.368 kb on - strand, within AO356_24580at 5557.440 kb on + strand, within AO356_24580at 5557.527 kb on + strand, within AO356_24580at 5557.527 kb on + strand, within AO356_24580at 5557.528 kb on - strand, within AO356_24580at 5557.528 kb on - strand, within AO356_24580at 5557.528 kb on - strand, within AO356_24580at 5557.577 kb on + strand, within AO356_24580at 5557.641 kb on - strand, within AO356_24580at 5557.762 kb on - strandat 5557.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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5,551,246 + AO356_24570 0.70 +0.1
5,551,247 - AO356_24570 0.70 -1.1
5,551,459 + AO356_24570 0.79 +0.5
5,551,459 + AO356_24570 0.79 +0.5
5,551,459 + AO356_24570 0.79 +1.6
5,551,459 + AO356_24570 0.79 -0.7
5,551,460 - AO356_24570 0.79 -0.2
5,551,460 - AO356_24570 0.79 +0.4
5,551,640 - AO356_24570 0.87 -1.0
5,551,648 + AO356_24570 0.87 -0.4
5,551,648 + AO356_24570 0.87 +0.4
5,551,648 + AO356_24570 0.87 -0.7
5,551,648 + AO356_24570 0.87 +1.5
5,551,648 + AO356_24570 0.87 +0.7
5,551,648 + AO356_24570 0.87 -0.1
5,551,648 + AO356_24570 0.87 -0.0
5,551,649 - AO356_24570 0.87 -0.9
5,551,649 - AO356_24570 0.87 -0.8
5,551,654 + AO356_24570 0.88 +0.6
5,551,654 + AO356_24570 0.88 -0.1
5,551,654 + AO356_24570 0.88 +0.3
5,551,654 + AO356_24570 0.88 -1.2
5,551,654 + AO356_24570 0.88 -0.2
5,551,654 + AO356_24570 0.88 -1.2
5,551,654 + AO356_24570 0.88 +1.3
5,551,655 - AO356_24570 0.88 -0.8
5,551,655 - AO356_24570 0.88 -0.2
5,551,655 - AO356_24570 0.88 -0.0
5,551,655 - AO356_24570 0.88 +0.6
5,551,657 - AO356_24570 0.88 +0.4
5,551,705 + AO356_24570 0.90 +0.1
5,551,705 + AO356_24570 0.90 +0.0
5,551,708 + AO356_24570 0.90 -0.4
5,552,226 + +0.3
5,552,301 + +1.0
5,552,302 - +0.8
5,552,316 + -0.3
5,552,353 - -0.3
5,552,418 - -1.0
5,552,418 - +0.6
5,552,459 - +2.8
5,552,789 + AO356_24575 0.14 +2.1
5,552,789 + AO356_24575 0.14 -0.9
5,552,789 + AO356_24575 0.14 +1.3
5,552,790 - AO356_24575 0.14 -1.5
5,552,827 - AO356_24575 0.15 +0.1
5,553,051 + AO356_24575 0.20 +0.1
5,553,088 - AO356_24575 0.21 -0.3
5,553,111 + AO356_24575 0.21 +0.2
5,553,207 + AO356_24575 0.23 +2.0
5,553,208 - AO356_24575 0.23 -1.0
5,553,216 - AO356_24575 0.23 +1.3
5,553,251 + AO356_24575 0.24 -0.7
5,553,436 - AO356_24575 0.28 +1.0
5,553,436 - AO356_24575 0.28 +0.2
5,553,460 - AO356_24575 0.29 -0.0
5,553,507 + AO356_24575 0.30 +0.5
5,553,507 + AO356_24575 0.30 +0.3
5,553,507 + AO356_24575 0.30 +1.7
5,553,507 + AO356_24575 0.30 +0.0
5,553,508 - AO356_24575 0.30 -0.1
5,553,584 + AO356_24575 0.31 -0.6
5,553,584 + AO356_24575 0.31 -0.6
5,553,584 + AO356_24575 0.31 +1.1
5,553,585 - AO356_24575 0.31 -0.2
5,553,588 + AO356_24575 0.31 +0.4
5,553,589 - AO356_24575 0.31 +0.4
5,553,589 - AO356_24575 0.31 -0.2
5,553,657 + AO356_24575 0.33 -0.9
5,553,657 + AO356_24575 0.33 +0.6
5,553,657 + AO356_24575 0.33 +0.4
5,553,658 - AO356_24575 0.33 +0.0
5,553,658 - AO356_24575 0.33 +0.7
5,553,658 - AO356_24575 0.33 +0.3
5,553,658 - AO356_24575 0.33 +0.4
5,553,661 + AO356_24575 0.33 -0.6
5,553,661 + AO356_24575 0.33 +0.2
5,553,662 - AO356_24575 0.33 -0.8
5,553,662 - AO356_24575 0.33 -1.4
5,553,662 - AO356_24575 0.33 -1.7
5,553,662 - AO356_24575 0.33 +0.3
5,553,667 + AO356_24575 0.33 -1.2
5,553,667 + AO356_24575 0.33 +1.2
5,553,668 - AO356_24575 0.33 -0.4
5,553,720 + AO356_24575 0.34 -0.0
5,553,756 - AO356_24575 0.35 -0.6
5,553,790 - AO356_24575 0.36 -0.1
5,554,084 - AO356_24575 0.42 -0.5
5,554,084 - AO356_24575 0.42 +1.2
5,554,129 - AO356_24575 0.43 +1.6
5,554,140 + AO356_24575 0.43 +0.0
5,554,264 + AO356_24575 0.46 +0.4
5,554,713 + AO356_24575 0.55 -1.4
5,554,713 + AO356_24575 0.55 +1.2
5,554,714 - AO356_24575 0.55 +1.4
5,554,719 + AO356_24575 0.55 +1.3
5,554,769 - AO356_24575 0.57 +0.5
5,555,002 - AO356_24575 0.62 +0.2
5,555,557 - AO356_24575 0.73 -0.3
5,555,848 - AO356_24575 0.80 -0.6
5,555,891 + AO356_24575 0.80 +2.0
5,555,961 - AO356_24575 0.82 +0.6
5,555,997 + AO356_24575 0.83 +0.3
5,556,140 + AO356_24575 0.86 -1.1
5,556,141 - AO356_24575 0.86 +1.3
5,556,183 + AO356_24575 0.87 +0.7
5,556,189 + AO356_24575 0.87 -1.0
5,556,189 + AO356_24575 0.87 +1.0
5,556,189 + AO356_24575 0.87 +1.3
5,556,678 + +0.6
5,556,679 - +1.1
5,556,679 - +0.7
5,556,691 + +1.1
5,556,691 + -0.6
5,556,692 - +0.8
5,556,692 - +0.3
5,556,884 - -0.7
5,556,887 + -0.1
5,556,887 + -0.1
5,556,887 + +0.4
5,556,887 + -0.2
5,556,887 + +0.7
5,556,887 + +0.5
5,556,887 + +1.3
5,556,888 - +1.8
5,556,888 - -0.2
5,556,888 - +1.5
5,556,888 - +1.3
5,556,888 - -0.4
5,556,888 - +0.1
5,556,891 + -0.8
5,556,907 + +1.1
5,556,939 + -1.8
5,556,999 + -1.0
5,557,052 + +0.3
5,557,368 - AO356_24580 0.44 +0.3
5,557,440 + AO356_24580 0.54 -0.2
5,557,527 + AO356_24580 0.66 +0.1
5,557,527 + AO356_24580 0.66 -0.2
5,557,528 - AO356_24580 0.66 -0.1
5,557,528 - AO356_24580 0.66 -0.3
5,557,528 - AO356_24580 0.66 +0.3
5,557,577 + AO356_24580 0.73 -0.5
5,557,641 - AO356_24580 0.82 +0.6
5,557,762 - -1.3
5,557,762 - -0.3

Or see this region's nucleotide sequence