Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24360 and AO356_24365 are separated by 18 nucleotides AO356_24365 and AO356_24370 overlap by 4 nucleotides
AO356_24360: AO356_24360 - type VI secretion protein, at 5,497,566 to 5,498,897
_24360
AO356_24365: AO356_24365 - type VI secretion system protein ImpK, at 5,498,916 to 5,499,680
_24365
AO356_24370: AO356_24370 - type VI secretion system protein ImpL, at 5,499,677 to 5,503,501
_24370
Position (kb)
5498
5499
5500 Strain fitness (log2 ratio)
-2
-1
0
1 at 5498.347 kb on - strand, within AO356_24360 at 5498.347 kb on - strand, within AO356_24360 at 5498.347 kb on - strand, within AO356_24360 at 5498.739 kb on + strand, within AO356_24360 at 5498.739 kb on + strand, within AO356_24360 at 5498.916 kb on - strand at 5499.154 kb on - strand, within AO356_24365 at 5499.154 kb on - strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.246 kb on + strand, within AO356_24365 at 5499.247 kb on - strand, within AO356_24365 at 5499.247 kb on - strand, within AO356_24365 at 5499.456 kb on + strand, within AO356_24365 at 5499.457 kb on - strand, within AO356_24365 at 5499.706 kb on - strand at 5499.706 kb on - strand at 5499.791 kb on + strand at 5499.791 kb on + strand at 5500.208 kb on + strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.209 kb on - strand, within AO356_24370 at 5500.311 kb on - strand, within AO356_24370 at 5500.434 kb on - strand, within AO356_24370 at 5500.541 kb on + strand, within AO356_24370 at 5500.541 kb on + strand, within AO356_24370 at 5500.542 kb on - strand, within AO356_24370 at 5500.542 kb on - strand, within AO356_24370
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,498,347 - AO356_24360 0.59 +1.0 5,498,347 - AO356_24360 0.59 -0.8 5,498,347 - AO356_24360 0.59 +1.6 5,498,739 + AO356_24360 0.88 -0.1 5,498,739 + AO356_24360 0.88 -2.1 5,498,916 - +0.3 5,499,154 - AO356_24365 0.31 -1.8 5,499,154 - AO356_24365 0.31 +0.3 5,499,246 + AO356_24365 0.43 +1.3 5,499,246 + AO356_24365 0.43 -0.0 5,499,246 + AO356_24365 0.43 +0.7 5,499,246 + AO356_24365 0.43 -0.4 5,499,247 - AO356_24365 0.43 -0.2 5,499,247 - AO356_24365 0.43 -1.3 5,499,456 + AO356_24365 0.71 +1.1 5,499,457 - AO356_24365 0.71 +0.8 5,499,706 - +0.5 5,499,706 - -0.8 5,499,791 + -0.2 5,499,791 + +0.5 5,500,208 + AO356_24370 0.14 -0.6 5,500,209 - AO356_24370 0.14 +0.9 5,500,209 - AO356_24370 0.14 -0.5 5,500,209 - AO356_24370 0.14 -1.0 5,500,209 - AO356_24370 0.14 -1.1 5,500,311 - AO356_24370 0.17 -1.0 5,500,434 - AO356_24370 0.20 -0.8 5,500,541 + AO356_24370 0.23 -0.2 5,500,541 + AO356_24370 0.23 +0.4 5,500,542 - AO356_24370 0.23 -0.8 5,500,542 - AO356_24370 0.23 +0.3
Or see this region's nucleotide sequence