Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24165

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24155 and AO356_24160 are separated by 308 nucleotidesAO356_24160 and AO356_24165 overlap by 7 nucleotidesAO356_24165 and AO356_24170 overlap by 4 nucleotides AO356_24155: AO356_24155 - LysR family transcriptional regulator, at 5,416,538 to 5,417,431 _24155 AO356_24160: AO356_24160 - formate dehydrogenase, at 5,417,740 to 5,418,222 _24160 AO356_24165: AO356_24165 - formate dehydrogenase, at 5,418,216 to 5,419,775 _24165 AO356_24170: AO356_24170 - formate dehydrogenase, at 5,419,772 to 5,422,648 _24170 Position (kb) 5418 5419 5420Strain fitness (log2 ratio) -2 -1 0 1 2at 5417.264 kb on + strand, within AO356_24155at 5417.265 kb on - strand, within AO356_24155at 5417.265 kb on - strand, within AO356_24155at 5417.354 kb on + strandat 5417.360 kb on + strandat 5417.360 kb on + strandat 5417.361 kb on - strandat 5417.361 kb on - strandat 5417.363 kb on + strandat 5417.364 kb on - strandat 5417.451 kb on + strandat 5417.472 kb on + strandat 5417.472 kb on + strandat 5417.473 kb on - strandat 5417.473 kb on - strandat 5417.474 kb on + strandat 5417.474 kb on + strandat 5417.474 kb on + strandat 5417.475 kb on - strandat 5417.475 kb on - strandat 5417.475 kb on - strandat 5417.475 kb on - strandat 5417.475 kb on - strandat 5417.475 kb on - strandat 5417.475 kb on - strandat 5417.475 kb on - strandat 5417.733 kb on + strandat 5417.734 kb on - strandat 5417.734 kb on - strandat 5417.739 kb on + strandat 5417.740 kb on - strandat 5417.740 kb on - strandat 5417.821 kb on - strand, within AO356_24160at 5417.851 kb on + strand, within AO356_24160at 5417.851 kb on + strand, within AO356_24160at 5417.851 kb on + strand, within AO356_24160at 5417.851 kb on + strand, within AO356_24160at 5417.852 kb on - strand, within AO356_24160at 5417.932 kb on + strand, within AO356_24160at 5417.933 kb on - strand, within AO356_24160at 5417.968 kb on - strand, within AO356_24160at 5418.230 kb on + strandat 5418.231 kb on - strandat 5418.738 kb on + strand, within AO356_24165at 5418.738 kb on + strand, within AO356_24165at 5418.739 kb on - strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.788 kb on + strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.789 kb on - strand, within AO356_24165at 5418.867 kb on + strand, within AO356_24165at 5418.867 kb on + strand, within AO356_24165at 5418.867 kb on + strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.868 kb on - strand, within AO356_24165at 5418.869 kb on + strand, within AO356_24165at 5418.869 kb on + strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.870 kb on - strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.873 kb on + strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.874 kb on - strand, within AO356_24165at 5418.906 kb on - strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.014 kb on + strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.015 kb on - strand, within AO356_24165at 5419.016 kb on + strand, within AO356_24165at 5419.016 kb on + strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.017 kb on - strand, within AO356_24165at 5419.134 kb on - strand, within AO356_24165at 5419.134 kb on - strand, within AO356_24165at 5419.188 kb on + strand, within AO356_24165at 5419.311 kb on + strand, within AO356_24165at 5419.669 kb on - strandat 5419.777 kb on + strandat 5420.105 kb on + strand, within AO356_24170at 5420.105 kb on + strand, within AO356_24170at 5420.105 kb on + strand, within AO356_24170at 5420.105 kb on + strand, within AO356_24170at 5420.106 kb on - strand, within AO356_24170at 5420.106 kb on - strand, within AO356_24170at 5420.205 kb on - strand, within AO356_24170at 5420.210 kb on + strand, within AO356_24170at 5420.210 kb on + strand, within AO356_24170at 5420.267 kb on + strand, within AO356_24170at 5420.433 kb on + strand, within AO356_24170at 5420.433 kb on + strand, within AO356_24170at 5420.520 kb on - strand, within AO356_24170at 5420.738 kb on + strand, within AO356_24170at 5420.774 kb on + strand, within AO356_24170

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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5,417,264 + AO356_24155 0.81 -0.7
5,417,265 - AO356_24155 0.81 -0.3
5,417,265 - AO356_24155 0.81 +0.0
5,417,354 + -1.0
5,417,360 + -1.0
5,417,360 + -0.4
5,417,361 - -0.7
5,417,361 - +0.0
5,417,363 + +0.2
5,417,364 - -0.0
5,417,451 + -0.0
5,417,472 + -0.2
5,417,472 + -0.8
5,417,473 - -0.4
5,417,473 - -1.0
5,417,474 + -0.6
5,417,474 + +1.5
5,417,474 + -0.8
5,417,475 - -0.0
5,417,475 - -0.2
5,417,475 - +1.1
5,417,475 - -0.7
5,417,475 - -0.3
5,417,475 - -0.1
5,417,475 - +0.2
5,417,475 - +2.7
5,417,733 + -0.2
5,417,734 - -1.9
5,417,734 - +0.1
5,417,739 + -0.1
5,417,740 - -0.2
5,417,740 - +0.1
5,417,821 - AO356_24160 0.17 -1.7
5,417,851 + AO356_24160 0.23 +0.2
5,417,851 + AO356_24160 0.23 +0.4
5,417,851 + AO356_24160 0.23 +1.6
5,417,851 + AO356_24160 0.23 -1.3
5,417,852 - AO356_24160 0.23 -0.3
5,417,932 + AO356_24160 0.40 -0.1
5,417,933 - AO356_24160 0.40 -1.8
5,417,968 - AO356_24160 0.47 -0.9
5,418,230 + -0.8
5,418,231 - -0.2
5,418,738 + AO356_24165 0.33 -0.5
5,418,738 + AO356_24165 0.33 +1.6
5,418,739 - AO356_24165 0.34 -0.6
5,418,788 + AO356_24165 0.37 -1.1
5,418,788 + AO356_24165 0.37 -1.3
5,418,788 + AO356_24165 0.37 -0.7
5,418,788 + AO356_24165 0.37 +0.2
5,418,788 + AO356_24165 0.37 +0.1
5,418,789 - AO356_24165 0.37 -0.3
5,418,789 - AO356_24165 0.37 -0.8
5,418,789 - AO356_24165 0.37 +0.3
5,418,789 - AO356_24165 0.37 -1.4
5,418,867 + AO356_24165 0.42 +1.1
5,418,867 + AO356_24165 0.42 +2.0
5,418,867 + AO356_24165 0.42 +0.7
5,418,868 - AO356_24165 0.42 +0.6
5,418,868 - AO356_24165 0.42 -0.5
5,418,868 - AO356_24165 0.42 +0.1
5,418,868 - AO356_24165 0.42 +1.2
5,418,868 - AO356_24165 0.42 +1.7
5,418,869 + AO356_24165 0.42 +0.5
5,418,869 + AO356_24165 0.42 -0.2
5,418,870 - AO356_24165 0.42 -0.0
5,418,870 - AO356_24165 0.42 -1.1
5,418,870 - AO356_24165 0.42 +0.6
5,418,870 - AO356_24165 0.42 +2.5
5,418,870 - AO356_24165 0.42 +1.1
5,418,870 - AO356_24165 0.42 +0.1
5,418,873 + AO356_24165 0.42 -0.4
5,418,873 + AO356_24165 0.42 +0.6
5,418,873 + AO356_24165 0.42 -0.3
5,418,873 + AO356_24165 0.42 +0.2
5,418,873 + AO356_24165 0.42 +0.0
5,418,874 - AO356_24165 0.42 +1.6
5,418,874 - AO356_24165 0.42 -0.6
5,418,874 - AO356_24165 0.42 +1.0
5,418,874 - AO356_24165 0.42 -0.6
5,418,874 - AO356_24165 0.42 +1.0
5,418,906 - AO356_24165 0.44 -0.7
5,419,014 + AO356_24165 0.51 +0.2
5,419,014 + AO356_24165 0.51 +0.1
5,419,014 + AO356_24165 0.51 -0.1
5,419,014 + AO356_24165 0.51 +0.9
5,419,014 + AO356_24165 0.51 -0.2
5,419,014 + AO356_24165 0.51 +0.1
5,419,014 + AO356_24165 0.51 +0.3
5,419,014 + AO356_24165 0.51 +0.1
5,419,015 - AO356_24165 0.51 -0.7
5,419,015 - AO356_24165 0.51 +2.1
5,419,015 - AO356_24165 0.51 +0.2
5,419,015 - AO356_24165 0.51 +0.2
5,419,016 + AO356_24165 0.51 +0.5
5,419,016 + AO356_24165 0.51 -0.5
5,419,017 - AO356_24165 0.51 +0.9
5,419,017 - AO356_24165 0.51 +0.4
5,419,017 - AO356_24165 0.51 +0.4
5,419,017 - AO356_24165 0.51 -0.5
5,419,134 - AO356_24165 0.59 +0.7
5,419,134 - AO356_24165 0.59 -0.4
5,419,188 + AO356_24165 0.62 -0.5
5,419,311 + AO356_24165 0.70 -0.3
5,419,669 - +0.4
5,419,777 + -0.8
5,420,105 + AO356_24170 0.12 +1.0
5,420,105 + AO356_24170 0.12 +1.1
5,420,105 + AO356_24170 0.12 +0.5
5,420,105 + AO356_24170 0.12 -0.9
5,420,106 - AO356_24170 0.12 -0.1
5,420,106 - AO356_24170 0.12 +0.9
5,420,205 - AO356_24170 0.15 +0.9
5,420,210 + AO356_24170 0.15 +0.3
5,420,210 + AO356_24170 0.15 -0.3
5,420,267 + AO356_24170 0.17 +1.0
5,420,433 + AO356_24170 0.23 +0.9
5,420,433 + AO356_24170 0.23 +0.7
5,420,520 - AO356_24170 0.26 -2.5
5,420,738 + AO356_24170 0.34 +0.3
5,420,774 + AO356_24170 0.35 +0.4

Or see this region's nucleotide sequence