Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23950 and AO356_23955 are separated by 308 nucleotides AO356_23955 and AO356_23960 are separated by 122 nucleotides
AO356_23950: AO356_23950 - hypothetical protein, at 5,369,679 to 5,371,022
_23950
AO356_23955: AO356_23955 - GntR family transcriptional regulator, at 5,371,331 to 5,372,062
_23955
AO356_23960: AO356_23960 - MFS transporter, at 5,372,185 to 5,373,474
_23960
Position (kb) 5371
5372
5373 Strain fitness (log2 ratio) -2
-1
0
1 at 5370.558 kb on + strand, within AO356_23950 at 5370.559 kb on - strand, within AO356_23950 at 5370.640 kb on + strand, within AO356_23950 at 5370.640 kb on + strand, within AO356_23950 at 5370.641 kb on - strand, within AO356_23950 at 5370.747 kb on + strand, within AO356_23950 at 5370.747 kb on + strand, within AO356_23950 at 5370.748 kb on - strand, within AO356_23950 at 5370.818 kb on - strand, within AO356_23950 at 5370.847 kb on + strand, within AO356_23950 at 5370.848 kb on - strand, within AO356_23950 at 5370.863 kb on - strand, within AO356_23950 at 5371.062 kb on - strand at 5371.274 kb on + strand at 5371.275 kb on - strand at 5371.278 kb on + strand at 5371.279 kb on - strand at 5371.298 kb on - strand at 5371.324 kb on - strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.368 kb on - strand at 5371.546 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.848 kb on - strand, within AO356_23955 at 5371.877 kb on + strand, within AO356_23955 at 5371.877 kb on + strand, within AO356_23955 at 5371.877 kb on + strand, within AO356_23955 at 5371.986 kb on - strand, within AO356_23955 at 5371.986 kb on - strand, within AO356_23955 at 5372.178 kb on - strand at 5372.273 kb on + strand at 5372.274 kb on - strand at 5372.274 kb on - strand at 5372.587 kb on + strand, within AO356_23960 at 5372.588 kb on - strand, within AO356_23960 at 5372.588 kb on - strand, within AO356_23960 at 5372.668 kb on + strand, within AO356_23960 at 5372.669 kb on - strand, within AO356_23960 at 5372.669 kb on - strand, within AO356_23960 at 5372.906 kb on - strand, within AO356_23960 at 5373.021 kb on - strand, within AO356_23960 at 5373.021 kb on - strand, within AO356_23960
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,370,558 + AO356_23950 0.65 +0.1 5,370,559 - AO356_23950 0.65 +0.5 5,370,640 + AO356_23950 0.72 -0.1 5,370,640 + AO356_23950 0.72 +0.2 5,370,641 - AO356_23950 0.72 -1.7 5,370,747 + AO356_23950 0.79 -0.5 5,370,747 + AO356_23950 0.79 -1.0 5,370,748 - AO356_23950 0.80 -0.5 5,370,818 - AO356_23950 0.85 +0.6 5,370,847 + AO356_23950 0.87 +0.2 5,370,848 - AO356_23950 0.87 +1.0 5,370,863 - AO356_23950 0.88 -0.1 5,371,062 - -2.5 5,371,274 + +0.9 5,371,275 - +0.0 5,371,278 + -0.6 5,371,279 - +1.1 5,371,298 - +1.6 5,371,324 - +0.4 5,371,367 + +0.5 5,371,367 + +0.1 5,371,367 + -0.0 5,371,367 + -0.1 5,371,367 + +0.6 5,371,368 - -0.9 5,371,546 + AO356_23955 0.29 +0.4 5,371,847 + AO356_23955 0.70 -1.2 5,371,847 + AO356_23955 0.70 -0.5 5,371,847 + AO356_23955 0.70 -0.3 5,371,847 + AO356_23955 0.70 +0.3 5,371,847 + AO356_23955 0.70 -0.8 5,371,847 + AO356_23955 0.70 +0.5 5,371,848 - AO356_23955 0.71 +0.2 5,371,877 + AO356_23955 0.75 -1.5 5,371,877 + AO356_23955 0.75 -1.0 5,371,877 + AO356_23955 0.75 -0.9 5,371,986 - AO356_23955 0.89 +0.8 5,371,986 - AO356_23955 0.89 +0.5 5,372,178 - -0.2 5,372,273 + -1.2 5,372,274 - +0.0 5,372,274 - +0.3 5,372,587 + AO356_23960 0.31 -1.4 5,372,588 - AO356_23960 0.31 -2.4 5,372,588 - AO356_23960 0.31 -0.8 5,372,668 + AO356_23960 0.37 -0.5 5,372,669 - AO356_23960 0.38 -0.1 5,372,669 - AO356_23960 0.38 -0.0 5,372,906 - AO356_23960 0.56 -1.6 5,373,021 - AO356_23960 0.65 -1.0 5,373,021 - AO356_23960 0.65 +0.2
Or see this region's nucleotide sequence