Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23560 and AO356_23565 are separated by 102 nucleotides AO356_23565 and AO356_23570 overlap by 20 nucleotides
AO356_23560: AO356_23560 - hypothetical protein, at 5,281,149 to 5,283,518
_23560
AO356_23565: AO356_23565 - peptidase, at 5,283,621 to 5,285,405
_23565
AO356_23570: AO356_23570 - hemolysin secretion protein D, at 5,285,386 to 5,286,699
_23570
Position (kb) 5283
5284
5285
5286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5283.013 kb on - strand, within AO356_23560 at 5283.193 kb on + strand, within AO356_23560 at 5283.194 kb on - strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.220 kb on - strand, within AO356_23560 at 5283.220 kb on - strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.584 kb on - strand at 5283.584 kb on - strand at 5283.584 kb on - strand at 5283.584 kb on - strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.740 kb on + strand at 5283.741 kb on - strand at 5283.753 kb on + strand at 5283.754 kb on - strand at 5284.054 kb on - strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.402 kb on - strand, within AO356_23565 at 5284.530 kb on + strand, within AO356_23565 at 5284.986 kb on + strand, within AO356_23565 at 5284.986 kb on + strand, within AO356_23565 at 5284.987 kb on - strand, within AO356_23565 at 5285.064 kb on + strand, within AO356_23565 at 5285.064 kb on + strand, within AO356_23565 at 5285.065 kb on - strand, within AO356_23565 at 5285.247 kb on - strand at 5285.831 kb on + strand, within AO356_23570 at 5285.960 kb on - strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,283,013 - AO356_23560 0.79 +0.3 5,283,193 + AO356_23560 0.86 +0.4 5,283,194 - AO356_23560 0.86 -1.1 5,283,219 + AO356_23560 0.87 -0.8 5,283,219 + AO356_23560 0.87 -0.5 5,283,219 + AO356_23560 0.87 +0.3 5,283,219 + AO356_23560 0.87 -1.2 5,283,220 - AO356_23560 0.87 -0.2 5,283,220 - AO356_23560 0.87 -0.8 5,283,255 + AO356_23560 0.89 +0.3 5,283,255 + AO356_23560 0.89 +0.7 5,283,255 + AO356_23560 0.89 -0.2 5,283,255 + AO356_23560 0.89 -1.8 5,283,255 + AO356_23560 0.89 -0.1 5,283,583 + -0.6 5,283,583 + +1.5 5,283,583 + +0.3 5,283,583 + +1.0 5,283,584 - -0.3 5,283,584 - +0.1 5,283,584 - -0.9 5,283,584 - +1.6 5,283,738 + +2.2 5,283,738 + +0.6 5,283,738 + -0.6 5,283,738 + -0.4 5,283,738 + +0.1 5,283,738 + -0.4 5,283,738 + +0.4 5,283,739 - -0.1 5,283,739 - -1.2 5,283,739 - -0.7 5,283,739 - -0.1 5,283,739 - -0.3 5,283,740 + +0.1 5,283,741 - -0.4 5,283,753 + +0.1 5,283,754 - -0.0 5,284,054 - AO356_23565 0.24 +0.9 5,284,297 + AO356_23565 0.38 -0.7 5,284,297 + AO356_23565 0.38 -0.2 5,284,297 + AO356_23565 0.38 +0.2 5,284,297 + AO356_23565 0.38 +0.2 5,284,402 - AO356_23565 0.44 -0.3 5,284,530 + AO356_23565 0.51 +0.6 5,284,986 + AO356_23565 0.76 -0.4 5,284,986 + AO356_23565 0.76 +1.0 5,284,987 - AO356_23565 0.77 +0.1 5,285,064 + AO356_23565 0.81 -1.2 5,285,064 + AO356_23565 0.81 +1.0 5,285,065 - AO356_23565 0.81 -1.5 5,285,247 - -1.0 5,285,831 + AO356_23570 0.34 +0.4 5,285,960 - AO356_23570 0.44 +0.6 5,286,311 + AO356_23570 0.70 +0.1 5,286,311 + AO356_23570 0.70 -0.2 5,286,312 - AO356_23570 0.70 +0.2 5,286,312 - AO356_23570 0.70 +1.0 5,286,312 - AO356_23570 0.70 -0.3 5,286,312 - AO356_23570 0.70 +1.0 5,286,365 + AO356_23570 0.75 +2.3 5,286,365 + AO356_23570 0.75 -1.6 5,286,365 + AO356_23570 0.75 +0.8 5,286,366 - AO356_23570 0.75 +0.3 5,286,366 - AO356_23570 0.75 +1.3 5,286,366 - AO356_23570 0.75 +0.3 5,286,366 - AO356_23570 0.75 -1.4 5,286,366 - AO356_23570 0.75 -0.7
Or see this region's nucleotide sequence